PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G168700.1.p
Common NameGLYMA_14G168700, LOC100305913
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 348aa    MW: 39800.7 Da    PI: 5.9283
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G168700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.6e-283079150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien +nrqvtfskRrng++KKA+ELS+LCd+++avi+fs++g+l  +s
  Glyma.14G168700.1.p 30 KRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRLNHFS 79
                         79********************************************9997 PP
2K-box23.32.6e-091442111178
                K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                          +++ e+lqqe+++L++++++ ++++R +  + L+  s+ +L++ e++L + l+++ ++K+ ll ++++
  Glyma.14G168700.1.p 144 NSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLTRVIQRKEYLLSNHLS 211
                          57899**********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.6042282IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-382281IPR002100Transcription factor, MADS-box
CDDcd002657.03E-362396No hitNo description
SuperFamilySSF554553.92E-2923101IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-252444IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PfamPF003194.8E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-254459IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-255980IPR002100Transcription factor, MADS-box
PfamPF014862.0E-5146212IPR002487Transcription factor, K-box
PROSITE profilePS512976.84147247IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLAYIQHTLQ FIDNNKSSIK NMGRVKLEIK RIENPTNRQV TFSKRRNGLI KKAYELSILC  60
DIDIAVIMFS PSGRLNHFSG RRRIEDVFTR YINLPDQERD NAVSFPELPY RRSIQNKEYL  120
LRTLQQLRSE NDIALQLANP GDINSEIEEL QQEVNRLQQQ LQMAEEQIRL YEPDPLKMSS  180
MADLENSEKH LVDVLTRVIQ RKEYLLSNHL SSYDPSGIQG IPTSFENVGW LQDGSQNQAQ  240
IFDASAPLDP LRDLSSTMYG SFSQGRSSNA DPRGMGECHV SNPSDGNLQA WPQGYTLYPH  300
HIQHDMVGPD MPDMMPHAQV NLPITALEPP KNNEPVEYDQ SKQPHHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-1622111191MEF2 CHIMERA
6bz1_B2e-1622111191MEF2 CHIMERA
6bz1_C2e-1622111191MEF2 CHIMERA
6bz1_D2e-1622111191MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G168700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0897450.0BT089745.1 Soybean clone JCVI-FLGm-14M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544182.10.0agamous-like MADS-box protein AGL104
RefseqXP_028198761.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-120AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A445H8020.0A0A445H802_GLYSO; Agamous-like MADS-box protein
TrEMBLI1MAQ60.0I1MAQ6_SOYBN; Uncharacterized protein
STRINGGLYMA14G34160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-105AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]