PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G161900.1.p | ||||||||
Common Name | GLYMA_14G161900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 29074.3 Da PI: 4.4837 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.3e-18 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r lg+f taeeAa a+++a+++l+g Glyma.14G161900.1.p 18 EYRGVRQRT-WGKWVAEIREPKK---RTRLCLGSFATAEEAAMAYDEAARRLYG 67 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.30E-30 | 17 | 77 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-20 | 18 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-11 | 18 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-29 | 18 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-35 | 18 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.982 | 18 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEERANKGEG GPQNASCEYR GVRQRTWGKW VAEIREPKKR TRLCLGSFAT AEEAAMAYDE 60 AARRLYGPDA YLNLPHLQPM STSTIMSGKF KWFPSKNFIS MFPSCGLLNR LQELKRNSVM 120 SQSSSSSSND PKAEIQNVDS KNHGEDENPP KDVQTSLEEV LGDLQEKPQI DLHEFLQQMG 180 ILKEERQSKR TDSSGSSTVC EAVLTDDCDN LGVFSDKSVN WEALIEMDGL AGIQESEVTQ 240 LEAYEPNDDL TFSTSIWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-17 | 19 | 75 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G161900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235046 | 0.0 | AC235046.1 Glycine max strain Williams 82 clone GM_WBb0017A04, complete sequence. | |||
GenBank | AC235452 | 0.0 | AC235452.1 Glycine max strain Williams 82 clone GM_WBb0166E13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553420.1 | 1e-168 | dehydration-responsive element-binding protein 2F | ||||
Refseq | XP_028217981.1 | 1e-168 | dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q9SVX5 | 4e-64 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | I1MAJ6 | 0.0 | I1MAJ6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G32210.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 2e-52 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G161900.1.p |
Publications ? help Back to Top | |||
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