PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G154400.1.p | ||||||||
Common Name | GLYMA_14G154400, LOC100782308, W2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 362aa MW: 40500.9 Da PI: 7.0681 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++++++ G g+W+t +++ g+ R++k+c++rw +yl Glyma.14G154400.1.p 45 RGPWTPEEDEVLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 92 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.4e-15 | 103 | 143 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Glyma.14G154400.1.p 103 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 143 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-22 | 36 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.743 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-29 | 42 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 45 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-10 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 24.404 | 93 | 147 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-24 | 95 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 97 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-11 | 103 | 143 | No hit | No description |
Pfam | PF00249 | 1.4E-13 | 103 | 143 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MRNPSLPTLA TTKTKVKNNS NKSTNNNNNI GTNYSPCCNN VGLKRGPWTP EEDEVLANYI 60 NKEGEGRWRT LPKRAGLLRC GKSCRLRWMN YLRPSVKRGH IAPDEEDLIL RLHRLLGNRW 120 SLIAGRIPGR TDNEIKNYWN THLSKKLINQ GIDPRTHKPL NPPSIAVPSS STTSTIPPSK 180 PPPVIITNNN INPFHHDLTN MFNQGVHLNH LGQHHQPPPL SNPCDNHNPV PAAATDDVSA 240 MGFMDNNNED CNNDGININY YSDDVFSSFL NSLINDDAFE AQQQQHHVQT EIPTPSERSI 300 NPLPCDDRVD DHHLGSITTA SASQGYDDEL GVLWESPLVS ATFSQHVNDH ITKRVHDHHN 360 Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-24 | 43 | 147 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-24 | 43 | 147 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-24 | 43 | 147 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59361 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G154400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB597932 | 0.0 | AB597932.1 Glycine max W2 mRNA for R2R3 MYB transcription factor, complete cds, cultivar: Harosoy. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241492.1 | 0.0 | R2R3 MYB transcription factor W2 | ||||
Swissprot | Q38850 | 8e-81 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A0B2S2U4 | 0.0 | A0A0B2S2U4_GLYSO; Transcription repressor MYB5 | ||||
TrEMBL | F5HQF1 | 0.0 | F5HQF1_SOYBN; R2R3 MYB transcription factor | ||||
STRING | GLYMA14G24500.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-79 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G154400.1.p |
Entrez Gene | 100782308 |
Publications ? help Back to Top | |||
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