PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G152700.1.p | ||||||||
Common Name | GLYMA_14G152700, Glyma14g24220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 31768 Da PI: 7.4266 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.7e-52 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv +yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfF++rd+ky++g+r+nr++ +gyWkatg dk Glyma.14G152700.1.p 9 LPPGFRFHPTDEELVIHYLCRKCASQHIAV-PIIAEIDLYKYDPWDLPGMALYGEKEWYFFTPRDRKYPNGSRPNRSAGTGYWKATGADK 97 79*************************999.88***************6666689*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v + + vg+kk Lvfy g+apkgekt+W+mheyrl Glyma.14G152700.1.p 98 PVGK--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 133 **98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-62 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MATTTQLHLP PGFRFHPTDE ELVIHYLCRK CASQHIAVPI IAEIDLYKYD PWDLPGMALY 60 GEKEWYFFTP RDRKYPNGSR PNRSAGTGYW KATGADKPVG KPKPVGIKKA LVFYAGKAPK 120 GEKTNWIMHE YRLADVDRSV RKKNSLRLDD WVLCRIYNKK GAIEKQQLPP PSGVRKIECS 180 EMEDEKPEIL PPDPPYTAAT VADCLYFEAS DSVPRLHTTD SSCSEQVVSA EFASEVQSEP 240 KRGSNNNNEF AYNYVDATLG NNQMSPLQDI FMYLSKSFCN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-82 | 5 | 165 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37405 | 0.0 | cotyledon| flower| leaf| meristem| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G152700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031219 | 0.0 | KT031219.1 Glycine max clone HN_CCL_8 NAC transcription factor (Glyma14g24220.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238154.2 | 0.0 | NAC domain protein | ||||
Refseq | XP_028200767.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-147 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0K2CT73 | 0.0 | A0A0K2CT73_SOYBN; NAC transcription factor | ||||
TrEMBL | A0A445H5X4 | 0.0 | A0A445H5X4_GLYSO; NAC domain-containing protein 2 | ||||
STRING | GLYMA14G24220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-139 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G152700.1.p |