PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G145700.1.p | ||||||||
Common Name | GLYMA_14G145700, LOC100800146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 384aa MW: 42515.6 Da PI: 6.6743 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 256 | 290 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG+++++ +l Glyma.14G145700.1.p 256 CLHCATDKTPQWRTGPMGPKTLCNACGVRFKSGRL 290 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.3E-79 | 10 | 347 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 2.2E-17 | 250 | 300 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.991 | 250 | 286 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.04E-15 | 251 | 314 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.1E-14 | 253 | 288 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.38E-14 | 255 | 302 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 256 | 281 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-15 | 256 | 290 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MESPNSSPIF PQFTFDTNKN NNNPDNFIVE DLLDFSNDDV VITDATFDSI TTDSSTVTTV 60 VDSCNSSSFS GSDPNTVPDV GSQNLSDGHF SGDLCVPYDD IAELEWLSNF VEESFSSEDL 120 QQMQLISGMN ARNYDVSEAR EFHYEPTTRS GPHTPEPTTK SGGLHYEPTR NSPIFNSEVS 180 VPAKARSKRS RGPPCNWASR LLVLSPTTSS SSDSEVTVPA PAEHGPAPAK KAAKAGPRKK 240 DSGSDGNGSG GDGRRCLHCA TDKTPQWRTG PMGPKTLCNA CGVRFKSGRL VPEYRPAASP 300 TFVLTKHSNS HRKVLELRRQ KEMVRAQQHH QQHHQQQQQF LHHHHHNHNH HHHQHHQNMM 360 FDVSNGDDYL IHQPVGPDFR QLI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39370 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G145700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 9e-44 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545608.1 | 0.0 | GATA transcription factor 12 | ||||
Refseq | XP_028199691.1 | 0.0 | GATA transcription factor 12-like | ||||
Swissprot | P69781 | 4e-95 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A445H5M8 | 0.0 | A0A445H5M8_GLYSO; GATA transcription factor | ||||
TrEMBL | K7M6T4 | 0.0 | K7M6T4_SOYBN; GATA transcription factor | ||||
STRING | GLYMA14G22460.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-63 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G145700.1.p |
Entrez Gene | 100800146 |
Publications ? help Back to Top | |||
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