PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G143400.1.p | ||||||||
Common Name | GLYMA_14G143400, LOC100786044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 1005aa MW: 110633 Da PI: 5.1522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Glyma.14G143400.1.p 37 KGQWTSEEDDILQNAVERFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65.7 | 8.2e-21 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw ++l Glyma.14G143400.1.p 89 KGPWSKEEDEIIIELVKKHGPKKWSTIAQHLP-GRIGKQCRERWVNHL 135 79******************************.************996 PP | |||||||
3 | Myb_DNA-binding | 45.4 | 1.9e-14 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ l+++++ +G++ W+ ++ ++ gRt++ +k++w+ Glyma.14G143400.1.p 141 KEAWTREEELALIHYHQIFGNK-WAELSKVIP-GRTDNAIKNHWN 183 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.54 | 32 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-14 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 37 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-21 | 38 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.24E-15 | 38 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-12 | 40 | 83 | No hit | No description |
PROSITE profile | PS51294 | 32.397 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-31 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-19 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-19 | 89 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-17 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 96 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 140 | 188 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.277 | 140 | 190 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.2E-13 | 141 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.33E-11 | 143 | 183 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-21 | 143 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1005 aa Download sequence Send to blast |
MDGEQSMPAP SHGQVDGAQK VRALHGRTTG PTRRSTKGQW TSEEDDILQN AVERFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKHGPK KWSTIAQHLP 120 GRIGKQCRER WVNHLDPTIK KEAWTREEEL ALIHYHQIFG NKWAELSKVI PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLT QFESIPPHAG NLNQPIRLQC SGDDNGSKWT EGEEISDYSQ 240 GSANAVYFPS ATGTSSADLQ TGEAYRKNEE CSLGKDHCPN QVSCSEPYYV SNDDVSICIP 300 EIAHQEACTS QFVEQQSHEP GNSICGDCQF NFQSSPNVSS MVLGQESSEL QRDFIAPSEI 360 CDMVNVPFPT SVELGVSTSM GTASMDSLKP EHMLISDDEC CRVLFSDAMN DGCFPPVDYN 420 KSEDIAEFSG YCSFCRSCNI QISETGGTST AKLTCPQCSN NYKGISSSQS VPPVLSIRDD 480 RLGPSANSNQ LFVTEDHHFV SRASANFTYL NDISCSPCVD GIGSAVMEKT NVHTEKEDSG 540 SLCYEPPRFP SLDIPFFSCD LVQSGSDMQQ EFSPLGIRQF MMSSMNCLTP FRLWDSPSRD 600 DNPDALLKSA AKTFTGTPSI LKKRSRDLLS PLSDKRMDKK LETDITSSMF TRNFSSLDVT 660 FGDNETRKAD MPSSSLQTQN SRASVDDDNK ENCGQTYKGE QVLEPIKSAI LDEKNSQKGT 720 VDGNSQHNVK QQPLDSKMKI NAAAGIEQQQ SGVLVEHDVN DLSLSSPDQV GLNSDRGLDS 780 SAKTPKSLNK SLEAASNQSG HLKLSSKSPC PRVNSCSPCV RAKEHEGLSV AVTRVQAPGD 840 NSGEQTRRDG GFETSSIFGG TPSAWKSPWF FNTFLSSPRL DTEILIEDFG YFMSPGDRSY 900 DALGWLKQVS DQTAATYANA QEILANGTPK ALPKDASEND KDRDHENNYP ANQPGNHSQL 960 ASNALIERRT LDFSECETPG RGDNSKSSAM SFSSPSSYLM KGCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-66 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-66 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.62733 | 0.0 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G143400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545596.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_028201178.1 | 0.0 | transcription factor MYB3R-1-like isoform X1 | ||||
TrEMBL | A0A0B2RBI9 | 0.0 | A0A0B2RBI9_GLYSO; Myb-related protein 3R-1 | ||||
TrEMBL | K7M6R3 | 0.0 | K7M6R3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G21523.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 | Representative plant | OGRP9448 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G143400.1.p |
Entrez Gene | 100786044 |