PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G140100.1.p

Common Name

GLYMA_14G140100, LOC100811175

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 374aa MW: 41593.1 Da PI: 8.6894

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G140100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.7e-55	27	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++k+++++++ ++i++vd++k+ePw+Lp+k+k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdk Glyma.14G140100.1.p 27 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIADVDLNKCEPWELPEKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 115 79***********************999.88***********99999********************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+l++ ++elvg+kktLvfykgrap+gek++Wvmheyr+ Glyma.14G140100.1.p 116 EILNSaTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 154 9878899**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-63	24	177	IPR003441	NAC domain
PROSITE profile	PS51005	61.259	27	177	IPR003441	NAC domain
Pfam	PF02365	7.3E-29	28	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MQKDKEVITK EGKDIEMEGN HEKEETLPPG FRFHPTDEEL ISYYLTNKIS DSNFTGKAIA 60 DVDLNKCEPW ELPEKAKMGQ KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEILNS 120 ATSELVGMKK TLVFYKGRAP RGEKSNWVMH EYRIHSKSSS FRTNKQDEWV VCRVFRKSAG 180 AKKFPSSSHI RALNLNPFSL EVGPSIMPPP PMMHLADPAA AAHFLYGRNY MMNPSEVAEV 240 TRVLRGGGPT NVNVMNMNLP MQYSHLNNPV AGGGGEGFTI SGLNLNLGGT VATTTAQAQQ 300 SLLRPMMPPP QPSPAHTIAQ VHHDFSSNMV TPNIALAADN VGYGGEVASA NSHGNRYMGM 360 DHCMDLDNYW PSY*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MQKDKEVITK EGKDIEMEGN HEKEETLPPG FRFHPTDEEL ISYYLTNKIS DSNFTGKAIA  60
DVDLNKCEPW ELPEKAKMGQ KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEILNS  120
ATSELVGMKK TLVFYKGRAP RGEKSNWVMH EYRIHSKSSS FRTNKQDEWV VCRVFRKSAG  180
AKKFPSSSHI RALNLNPFSL EVGPSIMPPP PMMHLADPAA AAHFLYGRNY MMNPSEVAEV  240
TRVLRGGGPT NVNVMNMNLP MQYSHLNNPV AGGGGEGFTI SGLNLNLGGT VATTTAQAQQ  300
SLLRPMMPPP QPSPAHTIAQ VHHDFSSNMV TPNIALAADN VGYGGEVASA NSHGNRYMGM  360
DHCMDLDNYW PSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-57	26	183	19	174	NAC domain-containing protein 19
3swm_B	1e-57	26	183	19	174	NAC domain-containing protein 19
3swm_C	1e-57	26	183	19	174	NAC domain-containing protein 19
3swm_D	1e-57	26	183	19	174	NAC domain-containing protein 19
3swp_A	1e-57	26	183	19	174	NAC domain-containing protein 19
3swp_B	1e-57	26	183	19	174	NAC domain-containing protein 19
3swp_C	1e-57	26	183	19	174	NAC domain-containing protein 19
3swp_D	1e-57	26	183	19	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G140100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	3e-93	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006596169.2	0.0	NAC domain-containing protein 59
Refseq	XP_028199934.1	0.0	NAC domain-containing protein 59-like isoform X2
Swissprot	Q9FLJ2	5e-80	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K7M6P1	0.0	K7M6P1_SOYBN; Uncharacterized protein
STRING	GLYMA14G20276.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-115	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Glyma.14G140100.1.p
Entrez Gene	100811175

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]