PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G123900.1.p | ||||||||
Common Name | GLYMA_14G123900, LOC100805277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 37035.8 Da PI: 4.9831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 102 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp++ r r++lg+f taeeAa +++a+ l+g Glyma.14G123900.1.p 102 KFRGVRQRP-WGKWAAEIRDPVQ---RVRIWLGTFKTAEEAALCYDNAAITLRG 151 89*******.**********755...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 101 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-21 | 102 | 160 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.629 | 102 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-11 | 102 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-37 | 102 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.15E-32 | 102 | 158 | No hit | No description |
PRINTS | PR00367 | 3.2E-10 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEQQNSILCK YTEHQTVMKK HMKSKDNTFC SPKVISISLI DPYATDSSSD EENVMRRRRV 60 KRYVNRIELQ PAFKPVTTRK RHAGDAATLR KPPAKVTNSC RKFRGVRQRP WGKWAAEIRD 120 PVQRVRIWLG TFKTAEEAAL CYDNAAITLR GPDALTNFGR SRPEETPEKE EMVEKEEFTS 180 GKPEMKVVVK PETQVSVSVS GCYDSGDECC LNLSSPTSVL QFSAEPYKPD EPFPGSTETR 240 TVVEECHGET VSFSDSSECI LKDMPWDDVF NFPVMFDEPL SHLFDETTPF SISDGFGDEK 300 FLPSSTLCQV DDYFQDILLG SDPLVVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 101 | 158 | 4 | 62 | ATERF1 |
3gcc_A | 3e-21 | 101 | 158 | 4 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G123900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544092.1 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
Refseq | XP_028199256.1 | 0.0 | ethylene-responsive transcription factor CRF1-like | ||||
Swissprot | Q9SUE3 | 6e-54 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A445H714 | 0.0 | A0A445H714_GLYSO; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | K7M7A3 | 0.0 | K7M7A3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G29040.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-46 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G123900.1.p |
Entrez Gene | 100805277 |
Publications ? help Back to Top | |||
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