PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G110600.1.p | ||||||||
Common Name | GLYMA_14G110600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 673aa MW: 74317.5 Da PI: 6.0617 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.8 | 2.8e-24 | 206 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse.......kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++ +A+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Glyma.14G110600.1.p 206 KPRVVWSVELHRKFVSAVNQL-GIDmliillaEAVPKKILDLMNVEKLTRENVASHLQKYRL 266 79*******************.55433333338****************************8 PP | |||||||
2 | Response_reg | 77 | 6.5e-26 | 22 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+ + +++l+++l++ +y +v++++++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +++++++ + Glyma.14G110600.1.p 22 VLAVDDDSTCLMVLETLLRRCQY-HVTTTKNAITALKLLRENKtmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNDDPKMVMK 109 799********************.***************99999********************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Glyma.14G110600.1.p 110 GITHGACDYLLKPVRIEELQN 130 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 9.7E-164 | 1 | 671 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.27E-35 | 19 | 144 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.6E-42 | 19 | 154 | No hit | No description |
SMART | SM00448 | 5.4E-31 | 20 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.283 | 21 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.5E-23 | 22 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.71E-26 | 23 | 136 | No hit | No description |
SuperFamily | SSF46689 | 1.43E-16 | 203 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-27 | 205 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-21 | 206 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.7E-6 | 208 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MTVVEDHRMD DLRDQFPIGM RVLAVDDDST CLMVLETLLR RCQYHVTTTK NAITALKLLR 60 ENKTMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NDDPKMVMKG ITHGACDYLL 120 KPVRIEELQN IWQHVIRRKK IDSKERNKTS DHDKPNADNG NGRVSAGTGN SDQNGKPSKK 180 RKDQDEDDEE ENEDGHDNED SSTLKKPRVV WSVELHRKFV SAVNQLGIDM LIILLAEAVP 240 KKILDLMNVE KLTRENVASH LQKYRLYLKR ISCVANRQAN LVAALGTADS SYLRMGSLSG 300 VGHMQTLTGP QQFHNNAFRP FPPGGMIGRL NASVGLNMHG ISSSEALQLS HAQNLNKSIN 360 DPLKFQSAIA CGNQNGIQGM PMSIGLDQLQ HNKGVSVGPI QNMSSLIDDR PTFGVSKKLS 420 DQTQKVTIGC SPSPVLDISN NDLVLKADSE NTQGGGVYEN LTSVASQHSQ FSLPLLDHGR 480 CSDIWSSPMQ SSGTNSYPPS ETLQGGNLSG QSSITSLFNQ SHDSPTDMHS QGLIFTNNLG 540 QMSNNVPFQG WDDNNHDSNY DANVIGNSID TLIDPEGHTS INSNYNRNLD FNFCNPLQMK 600 HDGIMGLSEE NSLKQQYGYI MNRQKSQNSS ATNNLGSLED FASSMMKQKQ DKVKFLDGSY 660 LCNNNYPAGT SM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-22 | 205 | 272 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G110600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236221 | 0.0 | AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014622044.1 | 0.0 | two-component response regulator ARR12 | ||||
Refseq | XP_028199202.1 | 0.0 | two-component response regulator ARR12-like | ||||
Swissprot | B8AEH1 | 1e-137 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
Swissprot | Q6K8X6 | 1e-137 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A0R0GJ59 | 0.0 | A0A0R0GJ59_SOYBN; Two-component response regulator | ||||
STRING | GLYMA14G13320.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-132 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G110600.1.p |
Publications ? help Back to Top | |||
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