PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G093800.1.p
Common NameGLYMA_14G093800, LOC100779256
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 268aa    MW: 29573.3 Da    PI: 9.3426
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G093800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.6e-14126170347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ +++++ ++lG+g+W+ I++++  +Rt+ q+ s+ qk+
  Glyma.14G093800.1.p 126 PWSEEEHRKFLEGLEKLGKGDWRGISKKFVITRTPSQVASHAQKF 170
                          8*****************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.525119175IPR017930Myb domain
SuperFamilySSF466891.2E-16120176IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-18122174IPR006447Myb domain, plants
SMARTSM007171.2E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-11123166IPR009057Homeodomain-like
CDDcd001671.45E-10126171No hitNo description
PfamPF002493.0E-12126169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRMGRKCSYC GNFGHNSRTC NTHKRGLKLF GVQLDLCSSS SSSSLPLTSP CTSSSSSTPF  60
DIMKRSLSMD YLVSSRIISP SYNFLLGGGA DENSSDKTIT DGYIASVGGG GLTSTTHHQE  120
RKKGVPWSEE EHRKFLEGLE KLGKGDWRGI SKKFVITRTP SQVASHAQKF FLRQTSFNQR  180
KRRRSLFDME RDETTTLEQF NTCFKASGQF GSPSGTIITC PQWVSCNHSV LNWATTSTNY  240
THQSASPDLE LKLAVPILTE PCGRTEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183RKRRR
2179184RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G093800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545373.10.0transcription factor MYBS3
RefseqXP_028200533.10.0transcription factor MYBS3-like
TrEMBLA0A445H3X10.0A0A445H3X1_GLYSO; Transcription factor MYBS3
TrEMBLK7M5V80.0K7M5V8_SOYBN; Uncharacterized protein
STRINGGLYMA14G10740.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-44MYB_related family protein