PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G069100.1.p | ||||||||
Common Name | GLYMA_14G069100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21186.2 Da PI: 9.2869 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++I++ g++R++k+c++rw++yl Glyma.14G069100.1.p 13 KGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYL 60 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 4 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.514 | 8 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.83E-19 | 14 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.01E-12 | 15 | 60 | No hit | No description |
PROSITE profile | PS50090 | 4.31 | 61 | 95 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 86 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MRKPCCDKES INKGAWSKQE DQKLIDYIRV HGEGCWRSIP KAAGLHRCGK SCRLRWLNYL 60 RPDIKRGIFA EDEEDLIIKL MPSLVTDNEV KNYWNSHIRR KLIKMGIDPN NHKPHQSFPR 120 SHASTEGAST SESMNKVPFF KSSGVAASDH RISFTKEETA IISSSSPPLN LDLTIALPSP 180 MLRAAEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-17 | 10 | 102 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G069100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090465 | 1e-121 | BT090465.1 Soybean clone JCVI-FLGm-4F17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028200149.1 | 1e-129 | myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-59 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 1e-58 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A0R0GA81 | 1e-137 | A0A0R0GA81_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G07510.1 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-61 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G069100.1.p |