PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G062200.2.p
Common NameGLYMA_14G062200, MYB75
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 307aa    MW: 34844.2 Da    PI: 7.655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G062200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-072671346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT e+ +++  a + + ++   +W ++a++++ g+t  +++  ++ 
  Glyma.14G062200.2.p 26 EWTREDNKKFESALAIYDNDtpdRWFKVAAMIP-GKTVFDVIKQYRE 71
                         7********************************.****999999875 PP
2Myb_DNA-binding40.46.7e-13126170347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Glyma.14G062200.2.p 126 PWTEDEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0442277IPR017884SANT domain
SMARTSM007172.2E-82375IPR001005SANT/Myb domain
SuperFamilySSF466894.13E-112579IPR009057Homeodomain-like
PfamPF002494.6E-62671IPR001005SANT/Myb domain
CDDcd001675.70E-72672No hitNo description
PROSITE profilePS5129418.763119175IPR017930Myb domain
SuperFamilySSF466899.72E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17122174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-10123169IPR009057Homeodomain-like
SMARTSM007172.3E-10123173IPR001005SANT/Myb domain
PfamPF002492.0E-10126170IPR001005SANT/Myb domain
CDDcd001671.62E-8126170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MELETIYPPC FMPNSNWFVQ ESHSTEWTRE DNKKFESALA IYDNDTPDRW FKVAAMIPGK  60
TVFDVIKQYR ELEEDVSEIE AGRVPIPGYL ASSFTFELVD NHNYDGCRRR LAPVRGSDQE  120
RKKGVPWTED EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKVSGGK  180
DKRRPSIHDI TTVNLTETSA SDKNKPQLFN ASPVLAPQQK LNSISKVQLG WTSSHYNDGS  240
FMVFNPNSDA LFVSSSPDVT SMALKMQGQD LYDCALHEAY AKVKVPGFSM APRDFNNEAV  300
FGIHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1527891173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.273600.0cotyledon| epicotyl| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G062200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-158AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235748.10.0MYB transcription factor MYB75
RefseqXP_028201148.10.0transcription factor DIVARICATA-like
RefseqXP_028201149.10.0transcription factor DIVARICATA-like
RefseqXP_028201150.10.0transcription factor DIVARICATA-like
RefseqXP_028201151.10.0transcription factor DIVARICATA-like
RefseqXP_028201153.10.0transcription factor DIVARICATA-like
RefseqXP_028201154.10.0transcription factor DIVARICATA-like
RefseqXP_028201155.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H72e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A445H2510.0A0A445H251_GLYSO; Transcription factor DIVARICATA isoform A
TrEMBLQ0PJK80.0Q0PJK8_SOYBN; MYB transcription factor MYB75
STRINGGLYMA14G06750.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-92MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]