PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G058100.1.p | ||||||||
Common Name | GLYMA_14G058100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 26971.3 Da PI: 6.8725 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G ++W+ I++ ++ gR++k+c++rw + Glyma.14G058100.1.p 12 KGSWSPQEDATLLKLVNEHGARNWSVISAGIP-GRSGKSCRLRWCNQ 57 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ Glyma.14G058100.1.p 66 PFTPAEDKMIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 108 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.736 | 7 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.48E-30 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-18 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.65E-14 | 14 | 56 | No hit | No description |
PROSITE profile | PS51294 | 24.575 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-12 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 7.1E-15 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTTMTGGDNR VKGSWSPQED ATLLKLVNEH GARNWSVISA GIPGRSGKSC RLRWCNQLSP 60 EVQHRPFTPA EDKMIIKAHA IHGNKWATIS RLLPGRTDNA IKNHWNSTLR RRRTAEQSSS 120 SSASPPAKRP SSLFDTLHPL KKQCIEKENE EESPVTTSLS LFPPGEKSEE EEEEEEKEEF 180 ANQKVSDQNY FMQMMQRMIA EEVRNYMETL RNCSLEPGLD LLSPTLPNHL PSPCGFER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-36 | 11 | 112 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-36 | 11 | 112 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-36 | 11 | 112 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-36 | 11 | 112 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-36 | 11 | 112 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.13756 | 0.0 | meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G058100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595859.1 | 1e-168 | transcription factor MYB73 isoform X1 | ||||
Refseq | XP_028199805.1 | 1e-168 | transcription factor MYB73-like isoform X1 | ||||
TrEMBL | A0A0R0G9N6 | 1e-176 | A0A0R0G9N6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G06320.2 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-51 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G058100.1.p |