PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G056200.1.p | ||||||||
Common Name | GLYMA_14G056200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 394aa MW: 43242.6 Da PI: 4.6156 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 78 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv eIr+p + r r +lg+f +a+eAa a+++a+++++g Glyma.14G056200.1.p 78 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFSSAQEAALAYDEAARAMYG 128 56*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.02E-31 | 78 | 136 | No hit | No description |
Pfam | PF00847 | 1.1E-11 | 78 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-34 | 79 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-20 | 79 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 79 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.43 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MGAYDQVSLK PLDSSRKRKS RSRGYGTGSV AETIAKWKEY NEHLYSGKDD SRTTRKAPAK 60 GSKKGCMKGK GGPQNSQCNY RGVRQRTWGK WVGEIREPNR GSRLWLGTFS SAQEAALAYD 120 EAARAMYGPC ARLNFPGITD YASFKESLKE SPMAASSSCS SAETATSDTT TTSNQSEVCA 180 AEDVKENPRL VNVNDKVNDC HKAYEAASPT SRMKQEPKDE AVDHMVPGAG KILDVRPEGT 240 HDAGQVAEDV NKDQMDLPWI DGFDFSDNYL NRFSTDELFQ VDELLGLIDN NPIDESALMQ 300 SLDFGQMGFP GDGNPQVDDT LSSFIYQLQN PDAKLLGSLP HMEQTPSGFD YGLDFLKTVE 360 PGDYNGGGEE PRFLNLDDDL NPDSKGMQAR KDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 79 | 136 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 19 | SRKRKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9553 | 0.0 | leaf| root| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G056200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX440387 | 0.0 | JX440387.1 Glycine max DRE-binding protein 2A;2 (DREB2A;2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240942.2 | 0.0 | dehydration-responsive element-binding protein 2A2 | ||||
TrEMBL | A0A0R0G9U3 | 0.0 | A0A0R0G9U3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G06080.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 4e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G056200.1.p |
Entrez Gene | 100800134 |
Publications ? help Back to Top | |||
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