PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G050100.1.p | ||||||||
Common Name | ERF5, GLYMA_14G050100, LOC100795557 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23173.6 Da PI: 5.3272 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a+++a+++++g Glyma.14G050100.1.p 21 TRFRGVRKRP-WGRFAAEIRDpWK----KQRVWLGTFDSAEDAARAYDKAARSFRG 71 589*******.**********883....5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-12 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-30 | 21 | 79 | No hit | No description |
SMART | SM00380 | 2.7E-35 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.288 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 22 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 22 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MRRGRATAAV VDPTAEQAKE TRFRGVRKRP WGRFAAEIRD PWKKQRVWLG TFDSAEDAAR 60 AYDKAARSFR GPKAKTNFPS FPGPTDHHSS QQIPPLYQAH GLSTKFEPAQ VNRPTTSGMS 120 STVESFSGPR VPPSSSSSRK PLVVVNPIIP LDDDDDDCHS DCDSSSSVVD DQDCVLTSSF 180 RQPLPFDLNL PPPDAAYDDD DDDVPATALC L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 18 | 79 | 1 | 63 | ATERF1 |
3gcc_A | 5e-21 | 18 | 79 | 1 | 63 | ATERF1 |
5wx9_A | 7e-21 | 18 | 79 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.1673 | 0.0 | cotyledon| hypocotyl| leaf| root| seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G050100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ896930 | 0.0 | HQ896930.1 Glycine max ERF transcription factor 5 (ERF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304530.1 | 1e-152 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9SXS8 | 2e-41 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | H2BER5 | 1e-151 | H2BER5_SOYBN; ERF transcription factor 5 | ||||
STRING | GLYMA14G05470.4 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 3e-29 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G050100.1.p |
Entrez Gene | 100795557 |