PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G050000.3.p
Common NameGLYMA_14G050000, LOC100792928
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 417aa    MW: 45818.5 Da    PI: 7.9195
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G050000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-104469126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +++rtG C yG++C+++H+
  Glyma.14G050000.3.p 44 PGEPECLYYLRTGACGYGSNCRYHHP 69
                         5789*********************8 PP
2zf-CCCH35.51.6e-1188112327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tG CkyG++Ck++H++
  Glyma.14G050000.3.p  88 QPDCEYFLKTGMCKYGSTCKYHHPK 112
                          789********************96 PP
3zf-CCCH38.12.5e-12135157527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           C++++rtG Ck+G  CkF+H++
  Glyma.14G050000.3.p 135 SCPYYMRTGSCKFGVACKFHHPQ 157
                          6********************97 PP
4zf-CCCH40.16.1e-13272297227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ tGtCkyG+ CkF+H++
  Glyma.14G050000.3.p 272 DQPECRYFMSTGTCKYGSDCKFHHPK 297
                          689*********************96 PP
5zf-CCCH322e-10315339226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C++++ +G Ck+G++CkF H+
  Glyma.14G050000.3.p 315 GQAVCSYYRIYGMCKFGPTCKFDHP 339
                          7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9114371IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-54870IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.13185113IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-585112IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-888112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-491112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6129157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028130158IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4132157IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10134157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4135156IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624270298IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6276297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5311339IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544313341IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7315339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MPENRQVLRN ADSSDNIEAI RRLKINDNWD RDAAAQSTQY PDRPGEPECL YYLRTGACGY  60
GSNCRYHHPA HISIGTHYGE ELPQRAGQPD CEYFLKTGMC KYGSTCKYHH PKDRRGAAPV  120
SFNTLGFPMR QEEKSCPYYM RTGSCKFGVA CKFHHPQYAS LGAYPLAGGP PTPTSTIIPT  180
SGLSYAGGFP AWSAVPRMSY LSGQGLQSYV PPFLPSSQGV IPVQSWNNYM GNMNPAMLNG  240
FLGSNLVYDY MNLGEPLFGG QAINSALPNR PDQPECRYFM STGTCKYGSD CKFHHPKERI  300
SQSLINPLGL PVRPGQAVCS YYRIYGMCKF GPTCKFDHPV LTIPQNYGLT SPAMNVLDTP  360
LTRGLSNVQP PETSPSKLSS DNKLQHSDAK AATEDSSKQD DTTSNSFPAS AEPLHD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617640.0stem
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G050000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595836.20.0zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ94AD91e-112C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0R0GI960.0A0A0R0GI96_SOYBN; Uncharacterized protein
STRINGGLYMA14G05460.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-113C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]