PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G050000.1.p
Common NameGLYMA_14G050000, LOC100792928
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 418aa    MW: 45947.6 Da    PI: 7.7779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G050000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-104570126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +++rtG C yG++C+++H+
  Glyma.14G050000.1.p 45 PGEPECLYYLRTGACGYGSNCRYHHP 70
                         5789*********************8 PP
2zf-CCCH35.51.6e-1189113327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tG CkyG++Ck++H++
  Glyma.14G050000.1.p  89 QPDCEYFLKTGMCKYGSTCKYHHPK 113
                          789********************96 PP
3zf-CCCH38.12.5e-12136158527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           C++++rtG Ck+G  CkF+H++
  Glyma.14G050000.1.p 136 SCPYYMRTGSCKFGVACKFHHPQ 158
                          6********************97 PP
4zf-CCCH40.16.2e-13273298227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ tGtCkyG+ CkF+H++
  Glyma.14G050000.1.p 273 DQPECRYFMSTGTCKYGSDCKFHHPK 298
                          689*********************96 PP
5zf-CCCH322e-10316340226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C++++ +G Ck+G++CkF H+
  Glyma.14G050000.1.p 316 GQAVCSYYRIYGMCKFGPTCKFDHP 340
                          7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-54471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9114472IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-54971IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-586113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.13186114IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-889113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-492113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6130158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028131159IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4133158IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10135158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4136157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624271299IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6271298IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6277298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5312340IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544314342IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7316340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPENRQVLRN ADSSDNIEEA IRRLKINDNW DRDAAAQSTQ YPDRPGEPEC LYYLRTGACG  60
YGSNCRYHHP AHISIGTHYG EELPQRAGQP DCEYFLKTGM CKYGSTCKYH HPKDRRGAAP  120
VSFNTLGFPM RQEEKSCPYY MRTGSCKFGV ACKFHHPQYA SLGAYPLAGG PPTPTSTIIP  180
TSGLSYAGGF PAWSAVPRMS YLSGQGLQSY VPPFLPSSQG VIPVQSWNNY MGNMNPAMLN  240
GFLGSNLVYD YMNLGEPLFG GQAINSALPN RPDQPECRYF MSTGTCKYGS DCKFHHPKER  300
ISQSLINPLG LPVRPGQAVC SYYRIYGMCK FGPTCKFDHP VLTIPQNYGL TSPAMNVLDT  360
PLTRGLSNVQ PPETSPSKLS SDNKLQHSDA KAATEDSSKQ DDTTSNSFPA SAEPLHD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617640.0stem
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G050000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545603.20.0zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_006595835.20.0zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD91e-114C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0R0G9I40.0A0A0R0G9I4_SOYBN; Uncharacterized protein
STRINGGLYMA14G05460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-115C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]