PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G047000.2.p | ||||||||
Common Name | GLYMA_14G047000, LOC100791704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 312aa MW: 35759.5 Da PI: 7.1904 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 241 | 275 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+++++ LA+++gL+ +q+ +WF N+R ++ Glyma.14G047000.2.p 241 KWPYPSESQKQALAESTGLDLKQINNWFINQRKRH 275 569*****************************885 PP | |||||||
2 | ELK | 38.4 | 2.6e-13 | 195 | 216 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLk+EF+ Glyma.14G047000.2.p 195 ELKVQLLRKYSGYLGSLKKEFL 216 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.5E-15 | 62 | 106 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.5E-19 | 64 | 105 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.4E-26 | 114 | 165 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.5E-22 | 117 | 163 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.9E-9 | 195 | 216 | IPR005539 | ELK domain |
SMART | SM01188 | 7.1E-7 | 195 | 216 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.139 | 195 | 215 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.228 | 215 | 278 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-12 | 217 | 282 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-19 | 217 | 289 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 220 | 281 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.50E-12 | 227 | 279 | No hit | No description |
Pfam | PF05920 | 2.7E-17 | 235 | 274 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 253 | 276 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDMMNMETNN RKFLSLPLSN NNNNSGNAQM RSSSDNRRVP VTSNSNIAQE HHYSHHNPTD 60 TCSVRDKIMA HPLFPRLLSS YLNCLKVGAP PEVVASLEES CAKCESFNAS SGRTGGSIGE 120 DPALDQFMEA YCEMLIKYEQ ELTKPFKEAM LFFSRIECQL KALAVSSDFG QSETSSQNEV 180 DVHENNLDSQ AEDRELKVQL LRKYSGYLGS LKKEFLKKKK NGKLPKEARQ QLLDWWNRHY 240 KWPYPSESQK QALAESTGLD LKQINNWFIN QRKRHWKPSE DMQFAVMDAT NYYMENVMCK 300 PFPMDGMPML L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56951 | 0.0 | meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G047000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF128061 | 0.0 | EF128061.1 Medicago truncatula class I KNOX homeobox transcription factor (KNOX6) mRNA, complete cds. | |||
GenBank | GU461604 | 0.0 | GU461604.1 Medicago truncatula KNOX6 variant a mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545568.1 | 0.0 | homeobox protein SBH1 isoform X1 | ||||
Refseq | XP_006595822.1 | 0.0 | homeobox protein knotted-1-like LET6 isoform X2 | ||||
Refseq | XP_028199768.1 | 0.0 | homeobox protein SBH1-like isoform X1 | ||||
Refseq | XP_028199770.1 | 0.0 | homeobox protein knotted-1-like LET6 isoform X2 | ||||
Swissprot | P46608 | 1e-117 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A0B2NPW0 | 0.0 | A0A0B2NPW0_GLYSO; Homeobox protein SBH1 | ||||
TrEMBL | A0A0R0GL54 | 0.0 | A0A0R0GL54_SOYBN; WBb76L15.6 protein | ||||
TrEMBL | A0A445H1Z1 | 0.0 | A0A445H1Z1_GLYSO; Homeobox protein SBH1 isoform A | ||||
TrEMBL | K7M4X9 | 0.0 | K7M4X9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G05150.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-107 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G047000.2.p |
Entrez Gene | 100791704 |
Publications ? help Back to Top | |||
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