PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G038800.3.p

Common Name

GLYMA_14G038800, LOC100779786

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YC

Protein Properties

Length: 258aa MW: 28656.6 Da PI: 4.3727

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G038800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	36.7	9.1e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l +++ + +t++ ++++v+ ++fdfl div + Glyma.14G038800.3.p 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDQTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 69 899***************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.19E-19	1	71	IPR009072	Histone-fold
Pfam	PF00808	3.6E-11	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.4E-18	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DQTYEITLRR GAKTMNAFHL KQCVQTFNVF 60 DFLKDIVSKV PDLGSSVATG DDHAVTKRRK VAGDDDNDSD EELKRNKKPE PGHSSGRGRG 120 RGRGRGIRTV DQEMGSHAKC EDDSHVLKQN DNHQSNESME NASEPAEVKQ SFPVSKPTEV 180 CIRNFDLNLD PDEDMDSLDT PTSVPASSSA KSVSEEKHEE YPGWPLSDME KMTIDPIQLA 240 NINGRIDEDE EDYDEEM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-14	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	125	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G038800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006595786.1	0.0	dr1-associated corepressor
Refseq	XP_028199944.1	0.0	dr1-associated corepressor-like
TrEMBL	A0A0B2QWP9	0.0	A0A0B2QWP9_GLYSO; Dr1-associated corepressor
TrEMBL	A0A445H163	0.0	A0A445H163_GLYSO; Dr1-associated corepressor
TrEMBL	K7M4T4	0.0	K7M4T4_SOYBN; Uncharacterized protein
TrEMBL	K7M4T5	0.0	K7M4T5_SOYBN; Uncharacterized protein
STRING	GLYMA14G04321.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-51	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Glyma.14G038800.3.p
Entrez Gene	100779786