PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G034800.1.p

Common Name

GLYMA_14G034800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 350aa MW: 36900.8 Da PI: 8.3423

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G034800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.6	6.8e-68	133	293	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 sg+++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq +++a+++ a +s +++ +k++r +++++++s+t++s Glyma.14G034800.1.p 133 SGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSATAAVAGSSGSTSGTKKPRLI-ASQTTTTSHTSTS 221 7889********************************************99999999999999999999999986.88899999* PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+ Glyma.14G034800.1.p 222 NTTPPRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVEN 293 ******999******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.7E-62	135	292	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.1E-27	137	179	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-29	244	291	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MWSTQARSIN YPEMGMFVVA PASSFHHHHH HQPPQHDPSV MADSLNPATA LGVGVGVIPL 60 LAATPCLESD NNILGSRTRG GGGIQLWQDQ QQHHQSHYMK KQLQQGLLDH NSNTSSGNLI 120 QNSGEVTASG TSSGGTTCQD CGNQAKKDCT NRRCRTCCKS RGFDCPTHVK STWVPAARRR 180 ERQLMTSATA AVAGSSGSTS GTKKPRLIAS QTTTTSHTST SNTTPPRSFD TSSSHQDAGF 240 KESLPGQVRA PAVFKCVRVT AVEDGQDEYA YQAVVKIGGH VFKGFLYDQG VENRDVYPNL 300 SELHLGGGSG GAGRNGVSSS SPMMDPNDVY AASGGGLLGG SSAYGNPMN*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MWSTQARSIN YPEMGMFVVA PASSFHHHHH HQPPQHDPSV MADSLNPATA LGVGVGVIPL  60
LAATPCLESD NNILGSRTRG GGGIQLWQDQ QQHHQSHYMK KQLQQGLLDH NSNTSSGNLI  120
QNSGEVTASG TSSGGTTCQD CGNQAKKDCT NRRCRTCCKS RGFDCPTHVK STWVPAARRR  180
ERQLMTSATA AVAGSSGSTS GTKKPRLIAS QTTTTSHTST SNTTPPRSFD TSSSHQDAGF  240
KESLPGQVRA PAVFKCVRVT AVEDGQDEYA YQAVVKIGGH VFKGFLYDQG VENRDVYPNL  300
SELHLGGGSG GAGRNGVSSS SPMMDPNDVY AASGGGLLGG SSAYGNPMN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5599	0.0	pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G034800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006596598.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_028201054.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	6e-88	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A445H0X8	0.0	A0A445H0X8_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	I1M744	0.0	I1M744_SOYBN; Uncharacterized protein
STRING	GLYMA14G03900.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	8e-71	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Glyma.14G034800.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]