PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G027200.1.p | ||||||||
Common Name | Glyma14g03100.1, LOC100792224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 104aa MW: 11650.2 Da PI: 9.5667 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.5 | 6.3e-32 | 25 | 75 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey++ Glyma.14G027200.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAN 75 79***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.207 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-34 | 18 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.13E-46 | 18 | 92 | No hit | No description |
PRINTS | PR00404 | 1.1E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MEFPNEAIPE GCSQKKTGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LVVFSSRGRL YEYANNSVRG TIDRYKKACA ASTNPESVSE ANTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 1e-21 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 1e-21 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 1e-21 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 1e-21 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1tqe_P | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
3mu6_A | 1e-21 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-21 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-21 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-21 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6c9l_A | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-21 | 18 | 85 | 2 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37598 | 1e-177 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G027200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031274 | 1e-174 | KT031274.1 Glycine max clone HN_CCL_16 MADS transcription factor (Glyma14g03100.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304521.1 | 6e-71 | agamous-like MADS-box protein AGL1 | ||||
Refseq | XP_028199250.1 | 6e-71 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_028199251.1 | 4e-71 | agamous-like MADS-box protein AGL5 isoform X2 | ||||
Refseq | XP_028199252.1 | 4e-71 | agamous-like MADS-box protein AGL5 isoform X2 | ||||
Refseq | XP_028199253.1 | 4e-71 | agamous-like MADS-box protein AGL5 isoform X3 | ||||
Swissprot | P29381 | 1e-53 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A0R0G8B9 | 2e-70 | A0A0R0G8B9_SOYBN; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1P8P0F0 | 1e-69 | A0A1P8P0F0_SOYBN; Agamous-like 1 protein | ||||
TrEMBL | A0A445H0L8 | 1e-69 | A0A445H0L8_GLYSO; Agamous-like MADS-box protein AGL5 isoform A | ||||
TrEMBL | A0A445H0R0 | 1e-69 | A0A445H0R0_GLYSO; Agamous-like MADS-box protein AGL5 isoform B | ||||
TrEMBL | I1M6W3 | 1e-69 | I1M6W3_SOYBN; MADS transcription factor | ||||
STRING | GLYMA14G03100.1 | 2e-70 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 4e-56 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G027200.1.p |
Entrez Gene | 100792224 |
Publications ? help Back to Top | |||
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