PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G020100.1.p
Common NameGLYMA_14G020100, LOC100820249
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 223aa    MW: 24247.7 Da    PI: 7.4087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G020100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-192575155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+GVr ++ +gr++AeIrdp +   ++r++lg+f++ae+Aa+a++ a+++l+g
  Glyma.14G020100.1.p 25 PRYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDSAEDAARAYDTAARNLRG 75
                         68********.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-132575IPR001471AP2/ERF domain
CDDcd000181.49E-312585No hitNo description
SuperFamilySSF541713.14E-222685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-322684IPR001471AP2/ERF domain
SMARTSM003806.5E-362689IPR001471AP2/ERF domain
PROSITE profilePS5103223.8152683IPR001471AP2/ERF domain
PRINTSPR003671.3E-102738IPR001471AP2/ERF domain
PRINTSPR003671.3E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRKGRGGGAS AAAAAAVNGS VLKEPRYRGV RKRPWGRFAA EIRDPLKKAR VWLGTFDSAE  60
DAARAYDTAA RNLRGSKAKT NFPLSPFCYQ HPTTDPFFYA GFHDHQNNSN NNNDNLNNPQ  120
RPTSSGMSST VESFSGPRPP TTTTTTTTPF LTTTRRYPRT PPLVPEDCHS DCDSSSSVVD  180
DSDDNIVSSS FRPPLPFDLN ALPFDDDAAV VDDDLRCTAL CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-232384264ATERF1
3gcc_A6e-232384264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.551280.0cotyledon| flower| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G020100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959790.0BT095979.1 Soybean clone JCVI-FLGm-20M15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544774.11e-162ethylene-responsive transcription factor 3
SwissprotO803392e-54ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0R4J5611e-161A0A0R4J561_SOYBN; Uncharacterized protein
STRINGGLYMA14G02360.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-27ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]