PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G016300.1.p | ||||||||
Common Name | GLYMA_14G016300, Glyma14g01990.2, LOC100783376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 681aa MW: 74596.2 Da PI: 7.0435 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.4e-08 | 274 | 294 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg Glyma.14G016300.1.p 274 PCPEFRK-GTCQKGDSCEYAHG 294 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.32E-14 | 28 | 158 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.4E-15 | 35 | 163 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.5E-6 | 77 | 145 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 10 | 77 | 109 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 17.131 | 77 | 159 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.25E-10 | 79 | 154 | No hit | No description |
SMART | SM00248 | 0.0039 | 114 | 146 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.194 | 114 | 149 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.1E-5 | 269 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.666 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 274 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 274 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 304 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.869 | 304 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MCSDSKSKLS SPTLVVMENS NIQKQNLDGL YNSVLLELSA SDDYEAFKRE VEEKGLDVNE 60 AGFWYGRRIG SKKMGSETRT PLMIASLFGS AKVLNYILLQ KGGGVDVNRV CGSDRATALH 120 CAVAGGSESS LEIVKLLLDA GADAECLDAS GNKPVNLIAP AFDSLSKSRR KALEMFLRGG 180 GERDELMSQE MELQMFSVPE KKEGSDNKKE YPVDISLPDI NNGVYGTDEF RMYNFKVKPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL 300 HPAQYRTRLC KDETGCARKV CFFAHKPEEL RPVYASTGSA MPSPKSYSAS GLDMTAMSPL 360 ALSSTSLPMP TVSTPPMSPL AAASSPKSGS MWQNKINLTP PSLQLPGSRL KAALSARDLE 420 MEMELLGLES PARQQQQQQQ QLIEEIARIS SPSFRSKEFN RIVDLNPTNL DDLLASADPS 480 VFSQLHGLSV QPSTPTQSGL QMRQNMNHLR ASYPSNIPSS PVRKPSAFGF DSSAAVATAV 540 MNSRSAAFAK RSQSFIDRGA ATHHLGLSSA SNSSCRVSST LSDWSSPTGK LDWGVNGDKL 600 NKLRKSTSFG FRNSGVTASP IAQPEFGAEP DVSWVHSLVK DVPSERSEIF GAEKQQYDLS 660 KEMLPPWMEQ LYIEQEQMVA * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.31491 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| somatic embryo| stem| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G016300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031157 | 0.0 | KT031157.1 Glycine max clone HN_CCL_209 C3H-type 1 Zn transcription factor (Glyma14g01990.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544707.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | I1M6J5 | 0.0 | I1M6J5_SOYBN; C3H-type 1 Zn transcription factor | ||||
STRING | GLYMA14G01990.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 | Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G016300.1.p |
Entrez Gene | 100783376 |
Publications ? help Back to Top | |||
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