PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G016200.1.p
Common NameGLYMA_14G016200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 586aa    MW: 63251.1 Da    PI: 7.8666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G016200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32229286260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.14G016200.1.p 229 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 286
                          8****************************************.***************85 PP
2WRKY106.21.7e-33404462159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.14G016200.1.p 404 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 462
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.996223287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-27223287IPR003657WRKY domain
SuperFamilySSF1182903.01E-25225287IPR003657WRKY domain
SMARTSM007742.3E-34228286IPR003657WRKY domain
PfamPF031067.9E-25229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37389464IPR003657WRKY domain
SuperFamilySSF1182902.09E-29396464IPR003657WRKY domain
PROSITE profilePS5081138.825399464IPR003657WRKY domain
SMARTSM007743.1E-39404463IPR003657WRKY domain
PfamPF031063.5E-26405462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDGTTNSGEP RSSSVLQNTG ASEDPNRSGS GQNSMARYKL MSPAKLPISR SPCITIPPGL  60
SPTSFLESPV LLSNMKVEAS PTTGSLRKLQ QTMHGSMASA AFPVTTACFD TNTVDDRKSS  120
FFEFKPLSRS NMVPADFNNH VSKQSTQVEG PGKTQSFASS PLVESEIAVP SNELSLSSPV  180
QKVSSSASAP VDVDLDDINH KGNTATGLQA SHVEVRGSGL SVAAEKTSDD GYNWRKYGQK  240
LVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITEIVYKG THDHPKPQPS CRYSTGTVMS  300
IQGERSDKAS MAGRDDKATA MYGQVSHAAE PNSTPESSPV ATNDDGLEGV AGFVSNRTNE  360
EVDNDDPFSK RRKMELGNVD ITPVVKPIRE PRVVVQTLSE VDILDDGYRW RKYGQKVVRG  420
NPNPRSYYKC TNAGCPVRKH VERASHDPKA VITTYEGKHN HDVPAARNSS HDMAVPAAAA  480
GGQTRTKLEE SDTISLDLGM GISSAAEHRS NGQGKMLHSE FGDTQTHTSS SNFKFVHTTS  540
APVYFGVLHN SSNPFGSRDN RSDGPSLNRS SYPCPQSMGR ILMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37229465878Probable WRKY transcription factor 4
2lex_A1e-37229465878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66830.0hypocotyl| leaf| meristem| root| seed coat| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO324931070.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G016200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3231280.0AY323128.1 Glycine max putative WRKY-type DNA binding protein (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236902.20.0WRKY transcription factor 7
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLI1M6J30.0I1M6J3_SOYBN; Uncharacterized protein
STRINGGLYMA14G01980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein