PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G016000.1.p
Common NameGLYMA_14G016000, LOC100779977
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 546aa    MW: 61560.1 Da    PI: 5.609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G016000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.91e-1311765452374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +e L +cA+av+ +d+e +++l+++l++++s +g+p+qRl ay++eAL arla+s+s++yk l+++e +    se l+ ++l++e++P+l
  Glyma.14G016000.1.p 176 KEMLCTCAKAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKVLKCKEPT---GSELLSHMHLLYEICPYL 262
                          789*****************************************************************9...9***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf+++ aN aI e +++e++vHiiDf+i+qG+QW++L+qa a Rp+ pp++RiTg+++++s   ++  le +g rL+++A++ +vpfef+
  Glyma.14G016000.1.p 263 KFGYMSANGAIAEVMKEESEVHIIDFQINQGIQWVSLIQAVAGRPGAPPKIRITGFDDSTSAyaREGGLEIVGARLSRLAQSYNVPFEFH 352
                          **********************************************************998899999*********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + +  + +++el++L+++pgEa+aVn++++lh+++de v+++++rd++++l k lsPk+v++veqe+ +n+ +F+ rf+e+++yy a+f+
  Glyma.14G016000.1.p 353 A-IRAAPTEVELKDLALQPGEAIAVNFAMMLHHVPDECVDSRNHRDRLVRLAKCLSPKIVTLVEQESHTNNLPFFPRFVETMNYYLAIFE 441
                          *.6888999********************************************************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          s+++ lpre++eri+vE+++l+re+vn++acegaer+erhe l+kWr+r+++aGF+p+pl++++++++k l + ++++ y++ee++g+l+
  Glyma.14G016000.1.p 442 SIDVALPREHKERINVEQHCLAREVVNLIACEGAERVERHELLKKWRSRFTMAGFTPYPLNSFVTCSIKNLQQSYQGH-YTLEERDGALC 530
                          ****************************************************************************77.*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          lgW+++ L++ +aWr
  Glyma.14G016000.1.p 531 LGWMNQVLITSCAWR 545
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.746149526IPR005202Transcription factor GRAS
PfamPF035143.4E-129176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQMSQKHKMS YDSSRFSIEP AQNLGSCCFL QSGNLDYYSS SDNGSHATYP SVCIFEQYCT  60
LESSTNNNFP SLNSPSTVSF SPNNSPVSKL QSKPNVFSSQ NSLEIVDESL ENKSFLTLND  120
DELRHKIREL ESAMLGHDTD ILDTYDTIIP EESDSFLKEA ERWKRMMEMI SRGDLKEMLC  180
TCAKAVAGND METTEWLMSE LRKMVSVSGN PIQRLGAYML EALVARLASS GSTIYKVLKC  240
KEPTGSELLS HMHLLYEICP YLKFGYMSAN GAIAEVMKEE SEVHIIDFQI NQGIQWVSLI  300
QAVAGRPGAP PKIRITGFDD STSAYAREGG LEIVGARLSR LAQSYNVPFE FHAIRAAPTE  360
VELKDLALQP GEAIAVNFAM MLHHVPDECV DSRNHRDRLV RLAKCLSPKI VTLVEQESHT  420
NNLPFFPRFV ETMNYYLAIF ESIDVALPRE HKERINVEQH CLAREVVNLI ACEGAERVER  480
HELLKKWRSR FTMAGFTPYP LNSFVTCSIK NLQQSYQGHY TLEERDGALC LGWMNQVLIT  540
SCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-601795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.240510.0cotyledon| leaf| root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G016000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595703.20.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0R0GEN30.0A0A0R0GEN3_SOYBN; Uncharacterized protein
STRINGGLYMA14G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]