PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G010000.1.p

Common Name

GLYMA_14G010000, LOC100815617

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 308aa MW: 33889.2 Da PI: 7.3629

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G010000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.4	8.6e-32	139	195	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF Glyma.14G010000.1.p 139 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAIRRARGNGGRF 195 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-34	137	198	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.745	138	198	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.5E-27	140	195	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-23	141	163	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	143	163	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-23	172	195	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MQSKSETANQ LRSDPRSFAP NQSYSEPWWR GIQCNPVPQA MSGVNISNSS SLERPNGDSE 60 SSEEDDDATK EPQPTAPNQP GNYGQDHQAL QHSSSSAPLV RDDCLTQAPQ LELVGHSIGY 120 APFIGMPHAR MALPLEMAQE PVYVNAKQYQ GILRRRQARA KAELEKKLIK VRKPYLHESR 180 HQHAIRRARG NGGRFAKKTE VEASNHMNEE KDMGTGQVPL SRSISSSGFG SLPSDSAETW 240 NSPSVQQGAR GSQVHERFEE RNYANVLQSS STSCLHSGER AEEGDCSGQQ RGSISSEHTS 300 QRRLAIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	139	209	2	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.60632	0.0	cotyledon\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G010000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095457	0.0	BT095457.1 Soybean clone JCVI-FLGm-25M11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001349875.1	0.0	nuclear transcription factor Y subunit A-14
Swissprot	Q945M9	2e-58	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	I1M6C1	0.0	I1M6C1_SOYBN; Uncharacterized protein
STRING	GLYMA14G01360.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61
Representative plant	OGRP9696	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	2e-55	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	Glyma.14G010000.1.p
Entrez Gene	100815617

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]