PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G006900.1.p
Common NameGLYMA_14G006900, LOC100808300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 546aa    MW: 61133.9 Da    PI: 6.3435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G006900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.83.2e-1401755451374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ L++cA+a+s++dl  aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++yk+l+++e +   s+e l+++++++ev+P+
  Glyma.14G006900.1.p 175 LKHILIACAKAISDNDLLTAQWLMDELRQMVSVSGDPVQRLGAYMLEGLVARLAASGSSIYKSLRCKEPE---SAELLSYMHILYEVCPY 261
                          6899*****************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI +a++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef
  Glyma.14G006900.1.p 262 FKFGYMSANGAIADAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGRRLSKLAEHFKVPFEF 351
                          ***********************************************************998899999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +a +  d++l++L v+pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f
  Glyma.14G006900.1.p 352 HA-AAISGFDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMF 440
                          **.7888999******************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpre++eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr+ee++g+l
  Glyma.14G006900.1.p 441 ESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDR-YRLEERDGAL 529
                          *****************************************************************************66.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r Lv+ +aW+
  Glyma.14G006900.1.p 530 YLGWMNRDLVASCAWK 545
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.928149526IPR005202Transcription factor GRAS
PfamPF035141.1E-137175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004871Molecular Functionsignal transducer activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQASEQHRSS SMYYQPLQQI EAYCLPQYRS RNQQLYYHDG GHGTHFSTPS SSELYCTLES  60
SSVAGSFTLY NSPSTVSFSP NGSPISQQDS QSYPPDQYHS PENTYGSPMS GSCITDDLSS  120
LNFKHKLREL ESVMLGPDSD NLDSYESAIS NGNNSVPLEM DSWRQTMVAI SSKNLKHILI  180
ACAKAISDND LLTAQWLMDE LRQMVSVSGD PVQRLGAYML EGLVARLAAS GSSIYKSLRC  240
KEPESAELLS YMHILYEVCP YFKFGYMSAN GAIADAMKDE DRVHIIDFQI GQGSQWITLI  300
QAFAARPGGP PHIRITGIDD STSAYARGGG LHIVGRRLSK LAEHFKVPFE FHAAAISGFD  360
VQLHNLGVRP GEALAVNFAF MLHHMPDESV STQNHRDRLL RLVRSLSPKV VTLVEQESNT  420
NTAAFFPRFL ETLNYYTAMF ESIDVTLPRE HKERINVEQH CLARDLVNII ACEGVERVER  480
HEVLGKWRSR FAMAGFTPYP LSSLVNGTIK KLLENYSDRY RLEERDGALY LGWMNRDLVA  540
SCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6118254426378Protein SCARECROW
5b3h_A4e-6118254425377Protein SCARECROW
5b3h_D4e-6118254425377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.265460.0hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G006900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544277.10.0scarecrow-like transcription factor PAT1
RefseqXP_028200434.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B2SRN90.0A0A0B2SRN9_GLYSO; Scarecrow-like transcription factor PAT1
TrEMBLI1M6920.0I1M692_SOYBN; Uncharacterized protein
STRINGGLYMA14G01020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]