PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G006800.1.p | ||||||||
Common Name | GLYMA_14G006800, LOC100781219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 509aa MW: 55800.7 Da PI: 7.2035 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.6 | 1.9e-26 | 114 | 170 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkg+ef rsYY+Ct+++C++kk++++s+ ++++++ + g+Hnh+ Glyma.14G006800.1.p 114 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSN-NGHITDSICIGQHNHP 170 7***************************************9.***************8 PP | |||||||
2 | WRKY | 100.7 | 8.5e-32 | 289 | 347 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver++ d k+v++tYeg+H+he Glyma.14G006800.1.p 289 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASYDSKTVITTYEGQHDHE 347 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-23 | 107 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.187 | 108 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-22 | 109 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-29 | 113 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-21 | 114 | 170 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 277 | 349 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-28 | 281 | 349 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.348 | 284 | 349 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 289 | 348 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-25 | 290 | 346 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MVSTDKSADQ NIPSDELQQR VSPDSDTTLS QGHDTKNDLS KPEEATSILS IVVKNEEGKD 60 SDATACALES DQEGSTCSLP LGKPLQSPDT LSHEFPRLQS SQECPSIIRE KVSKDGYNWR 120 KYGQKHVKGN EFIRSYYKCT HPNCQAKKQL QQSNNGHITD SICIGQHNHP RPQLNSTVSV 180 ECVLPVVEQA PHKPSLANVE DKASVEHGCM PQQIKPLQSF PPAKVSPVNE LKAAHLQLTK 240 AKNQVHDNKE PESKRLKKDN SNADVARVDM STRESRVVVV QTSSEVDLVN DGYRWRKYGQ 300 KLVKGNTNPR SYYRCSNPGC PVKKHVERAS YDSKTVITTY EGQHDHEIPP GRTVTQNAAT 360 NTRTTATNGK AGTKSEGNTD DTGERSGLGL TSRLTEQQTG KSTTKSKAGD MVEFRVIRLS 420 NEGPEIKLSE QQQQKDNSAT KDDSVSNDVI CHSSSGVLCR SNEQLKGEVK PISEGSKDCL 480 KVVAVHDTPS TESEFNKQSA ADAEPVQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-35 | 278 | 351 | 3 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7799 | 0.0 | cotyledon| leaf| root| seed coat| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G006800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595661.1 | 0.0 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 7e-76 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | I1M690 | 0.0 | I1M690_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G01010.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9358 | 33 | 43 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 2e-76 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G006800.1.p |
Entrez Gene | 100781219 |
Publications ? help Back to Top | |||
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