PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.13G370100.1.p | ||||||||
Common Name | GLYMA_13G370100, LOC100798375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 310aa MW: 34592.9 Da PI: 8.9364 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.8 | 1.2e-29 | 158 | 217 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d++v++ tYegeHnh+ Glyma.13G370100.1.p 158 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSVDDQSVLVATYEGEHNHP 217 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-29 | 149 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.888 | 153 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 155 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-33 | 158 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-24 | 159 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MDYSSWMINT SLDLNINPHR LHEELPKKEV ENNFLSLNLE VKKSSVKQES AGALAEELKR 60 VSAENKKLTE MLTEMCENYN TLRGNLMEYM RKNPDKEHSS SKKRKSESNN NSIPMGVNGT 120 SESSSTDEES CKKQKEDIKT KISRVYMRTE ASDKSLIVKD GYQWRKYGQK VTRDNPSPRA 180 YFKCSFAPSC PVKKKVQRSV DDQSVLVATY EGEHNHPHPS QMEVTTGSNR CMTLGSVPCS 240 ASLSSSPPTA TLDWTKSKSS SESKNTSPKT ESPEVPQVLV EQMATSLTKD PNFRAALVAA 300 ISGKMLHNN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-20 | 157 | 219 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.33026 | 0.0 | cotyledon| flower| leaf| meristem| pod| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.13G370100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ322695 | 0.0 | DQ322695.1 Glycine max WRKY27 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543702.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-103 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | I1M5Y6 | 0.0 | I1M5Y6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G44730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 7e-87 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.13G370100.1.p |
Entrez Gene | 100798375 |