PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G369400.1.p
Common NameGLYMA_13G369400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 227aa    MW: 25869 Da    PI: 6.9478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G369400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1854102254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                          +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Glyma.13G369400.1.p  54 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 102
                          69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.48E-3453113No hitNo description
Gene3DG3DSA:3.30.730.102.3E-3454111IPR001471AP2/ERF domain
PROSITE profilePS5103221.12754111IPR001471AP2/ERF domain
PfamPF008472.9E-1154103IPR001471AP2/ERF domain
SMARTSM003805.4E-4154117IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2154113IPR016177DNA-binding domain
PRINTSPR003674.0E-115566IPR001471AP2/ERF domain
PRINTSPR003674.0E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MICRFIEEKA AKDDYINQCY KPLRDHFTFS DSQRRFTNKF EAISIHIMAR PQQRYRGVRQ  60
RHWGSWVSEI RHPLLKTRIW LGTFETAEDA ARAYDEAARL MCGPKARTNF PYNPNEPLSS  120
SSKLLSATLT AKLHKCHMAS LSLQMSKQKQ SQTEPHQGSS SDSGNAIAGT SSDNTGFRWP  180
EEEAQVEVPP AQQQQFQPVL QDDHIEQMIQ ELLDYGSMEL SFVDSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1753115467ATERF1
3gcc_A7e-1753115467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G369400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542132.21e-172ethylene-responsive transcription factor ERF003
SwissprotQ94AW59e-75ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A445IFI21e-170A0A445IFI2_GLYSO; Ethylene-responsive transcription factor ERF003
TrEMBLK7M4041e-170K7M404_SOYBN; Uncharacterized protein
STRINGGLYMA13G44660.21e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-48ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]