PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G357100.2.p
Common NameGLYMA_13G357100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 630aa    MW: 70014.5 Da    PI: 6.8595
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G357100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-21108163156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Glyma.13G357100.2.p 108 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 163
                          7999************************************************9877 PP
2START227.83.3e-712795014206
                          HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          ++a++el+k+a+++ep+W +s     e++n+de++++f+ +++       +s+ea+r+++vv+ +l+ lv+++ld++ qW+e+++    k
  Glyma.13G357100.2.p 279 NQAMEELIKMATVGEPLWLRSFetgrEILNYDEYVKEFAVENSsssgkpkRSIEASRDTAVVFVDLPSLVQSFLDVN-QWKEMFPclisK 367
                          689******************99***************9888899********************************.************ PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          a+t++vi++g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh
  Glyma.13G357100.2.p 368 AATVDVICNGeglsrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGH 456
                          ****************************************************************98.9********************** PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +kv+wveh +++++ +h+++r +v+sgla+ga++w atlq qce+
  Glyma.13G357100.2.p 457 CKVIWVEHSECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCER 501
                          *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2294159IPR009057Homeodomain-like
SuperFamilySSF466892.09E-2097166IPR009057Homeodomain-like
PROSITE profilePS5007118.091105165IPR001356Homeobox domain
SMARTSM003898.6E-19107169IPR001356Homeobox domain
PfamPF000467.9E-19108163IPR001356Homeobox domain
CDDcd000866.14E-17112163No hitNo description
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PROSITE profilePS5084839.477267504IPR002913START domain
SuperFamilySSF559615.49E-32269501No hitNo description
CDDcd088753.94E-113271500No hitNo description
SMARTSM002341.4E-67276501IPR002913START domain
PfamPF018524.2E-56278501IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-4331496IPR023393START-like domain
SuperFamilySSF559613.16E-7523607No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGADMSNNNN PPPTSHAKDL FASPALSLSL AGIFRHAGVA AADEAATSVE EGEEGSGGAA  60
ERLEEISSEN SGPTRSRSED DFEGGEAEPE DDDDAHGDNK NKKTKKKRKK YHRHTADQIR  120
EMEALFKESP HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEIEK  180
LKEKNKSLRE TINKACCPNC GVPTTSRDGV MPTEEQQLRI ENAKLKAEVE KLRAALGKYA  240
PGSTSPSCSS GHDQENRSSL DFYTGIFGLD KSRIMDIVNQ AMEELIKMAT VGEPLWLRSF  300
ETGREILNYD EYVKEFAVEN SSSSGKPKRS IEASRDTAVV FVDLPSLVQS FLDVNQWKEM  360
FPCLISKAAT VDVICNGEGL SRNGAVQLMF AELQMLTPMV PTREVYFVRF CKQLSAEQWA  420
IVDVSIDKVE DNIDASLVKC RKRPSGCIIE DKSNGHCKVI WVEHSECQKS AVHSMYRTIV  480
NSGLAFGARH WIATLQLQCE RLVFFMATNV PMKDSTGVAT LAGRKSILKL AQRMTWSFCH  540
AIGASSIHAW TKVTSKTGED IRISSRKNLN DPGEPLGLIL CAVCSVWLPV SPNVLFDFLR  600
DENRRTEVPL SCLLSFLTLL SILVNNLNG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109KKTKKKRKK
2105109KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.407820.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G357100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543638.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLI1M5J20.0I1M5J2_SOYBN; Uncharacterized protein
STRINGGLYMA13G43350.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]