PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G357100.1.p | ||||||||
Common Name | Glyma13g43350.1, LOC100808292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 763aa MW: 84239.4 Da PI: 6.1891 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 108 | 163 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Glyma.13G357100.1.p 108 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 163 7999************************************************9877 PP | |||||||
2 | START | 227.2 | 4.8e-71 | 279 | 501 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ++a++el+k+a+++ep+W +s e++n+de++++f+ +++ +s+ea+r+++vv+ +l+ lv+++ld++ qW+e+++ k Glyma.13G357100.1.p 279 NQAMEELIKMATVGEPLWLRSFetgrEILNYDEYVKEFAVENSsssgkpkRSIEASRDTAVVFVDLPSLVQSFLDVN-QWKEMFPclisK 367 689******************99***************9888899********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a+t++vi++g ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh Glyma.13G357100.1.p 368 AATVDVICNGeglsrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGH 456 ****************************************************************98.9********************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +kv+wveh +++++ +h+++r +v+sgla+ga++w atlq qce+ Glyma.13G357100.1.p 457 CKVIWVEHSECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCER 501 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 94 | 159 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.72E-20 | 97 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 105 | 165 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-19 | 107 | 169 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-18 | 108 | 163 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.18E-17 | 112 | 163 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 140 | 163 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.477 | 267 | 504 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.24E-32 | 269 | 501 | No hit | No description |
CDD | cd08875 | 1.37E-111 | 271 | 500 | No hit | No description |
SMART | SM00234 | 1.4E-67 | 276 | 501 | IPR002913 | START domain |
Pfam | PF01852 | 6.2E-56 | 278 | 501 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-4 | 331 | 496 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.02E-12 | 523 | 724 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MGADMSNNNN PPPTSHAKDL FASPALSLSL AGIFRHAGVA AADEAATSVE EGEEGSGGAA 60 ERLEEISSEN SGPTRSRSED DFEGGEAEPE DDDDAHGDNK NKKTKKKRKK YHRHTADQIR 120 EMEALFKESP HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEIEK 180 LKEKNKSLRE TINKACCPNC GVPTTSRDGV MPTEEQQLRI ENAKLKAEVE KLRAALGKYA 240 PGSTSPSCSS GHDQENRSSL DFYTGIFGLD KSRIMDIVNQ AMEELIKMAT VGEPLWLRSF 300 ETGREILNYD EYVKEFAVEN SSSSGKPKRS IEASRDTAVV FVDLPSLVQS FLDVNQWKEM 360 FPCLISKAAT VDVICNGEGL SRNGAVQLMF AELQMLTPMV PTREVYFVRF CKQLSAEQWA 420 IVDVSIDKVE DNIDASLVKC RKRPSGCIIE DKSNGHCKVI WVEHSECQKS AVHSMYRTIV 480 NSGLAFGARH WIATLQLQCE RLVFFMATNV PMKDSTGVAT LAGRKSILKL AQRMTWSFCH 540 AIGASSIHAW TKVTSKTGED IRISSRKNLN DPGEPLGLIL CAVCSVWLPV SPNVLFDFLR 600 DENRRTEWDI MSSGGTVQSI ANLAKGQDRG NAVAIQTIKL KENSVWILQD SCTNLYESMV 660 AYACVDITGI QSVMTGCDSS NLAILPSGFS IIPDGLESRP LVISSRQEEK NTEGGSLFTM 720 AFQILTNASP TAKLTLESVD SVNTLVSCTL RNIRTSLQCE DG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 109 | KKTKKKRKK |
2 | 105 | 109 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.40782 | 0.0 | pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G357100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031171 | 0.0 | KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543638.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A0K2CTQ7 | 0.0 | A0A0K2CTQ7_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment) | ||||
TrEMBL | I1M5J0 | 0.0 | I1M5J0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G43350.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4714 | 33 | 52 | Representative plant | OGRP9080 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G357100.1.p |
Entrez Gene | 100808292 |
Publications ? help Back to Top | |||
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