PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G355700.1.p
Common NameGLYMA_13G355700, LOC100784419
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 212aa    MW: 23445.3 Da    PI: 5.6082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G355700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-184495156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         s+y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g+
  Glyma.13G355700.1.p 44 SDYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKGH 95
                         78*****998.**********843...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-2144102IPR016177DNA-binding domain
CDDcd000185.47E-3244103No hitNo description
PfamPF008479.5E-134495IPR001471AP2/ERF domain
SMARTSM003801.6E-3545108IPR001471AP2/ERF domain
PROSITE profilePS5103222.14245102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-3145103IPR001471AP2/ERF domain
PRINTSPR003671.8E-94657IPR001471AP2/ERF domain
PRINTSPR003671.8E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTETARCHET PSSSTSNSST SKPLKTETPK QSKAKRNRDP TKHSDYHGVR MRNWGKWVSE  60
IREPRKKSRI WLGTFATPEM AARAHDVAAL SIKGHTAVLN FPNIVNMLPR PVTCAPRDIQ  120
AAAAEAAAMV EFDRESSEAE STELSEIVEL PNIEESFDSV ESRSEFALID SVDSWVYPPP  180
MTVGSICDMM MLGEHECGLF QFGTDHQTCS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19431071277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G355700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542090.11e-157dehydration-responsive element-binding protein 3
RefseqXP_028189561.11e-157dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445IF121e-156A0A445IF12_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLI1M5H71e-156I1M5H7_SOYBN; Uncharacterized protein
STRINGGLYMA13G43210.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]