PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G349700.2.p | ||||||||
Common Name | GLYMA_13G349700, LOC102668887 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 24955.1 Da PI: 6.2926 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.2 | 1.5e-39 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkC ++C+lapyfp++++k+f n+h+lFG+ +++++lk l++++r+ ams+++ye+++rardP+ G+++++l+lq+q++ + Glyma.13G349700.2.p 8 ACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMLKPLDQHHRDLAMSTVIYESDMRARDPIGGCYRLVLQLQSQIDYA 97 7***************************************************************************************** PP DUF260 91 kaelallke 99 +el+ll + Glyma.13G349700.2.p 98 TQELHLLLQ 106 ****98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.264 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-36 | 8 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSRSSTQACA ACKYQRRKCG SNCILAPYFP HDRQKQFLNA HRLFGVGKIT NMLKPLDQHH 60 RDLAMSTVIY ESDMRARDPI GGCYRLVLQL QSQIDYATQE LHLLLQHLAF FKSHPPNSNS 120 PDIINNVTPQ PPYPLEQQIP QEHQQQQQQQ QCFNYNLLQD DINMWTIQNA VPPLSPLSLE 180 NDINQDQDPV VDYGYDQKPG VLDLMDKIKS DDSSAQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-23 | 9 | 101 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-23 | 9 | 101 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G349700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595095.1 | 1e-161 | LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 4e-43 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | I1M5B9 | 1e-159 | I1M5B9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G42570.1 | 1e-160 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 7e-44 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G349700.2.p |
Entrez Gene | 102668887 |
Publications ? help Back to Top | |||
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