PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G349700.1.p

Common Name

GLYMA_13G349700, LOC102668887

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 218aa MW: 24955.1 Da PI: 6.2926

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G349700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.2	1.5e-39	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkC ++C+lapyfp++++k+f n+h+lFG+ +++++lk l++++r+ ams+++ye+++rardP+ G+++++l+lq+q++ + Glyma.13G349700.1.p 8 ACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMLKPLDQHHRDLAMSTVIYESDMRARDPIGGCYRLVLQLQSQIDYA 97 7*************************************************************************************** PP DUF260 91 kaelallke 99 +el+ll + Glyma.13G349700.1.p 98 TQELHLLLQ 106 **98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.264	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-36	8	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSRSSTQACA ACKYQRRKCG SNCILAPYFP HDRQKQFLNA HRLFGVGKIT NMLKPLDQHH 60 RDLAMSTVIY ESDMRARDPI GGCYRLVLQL QSQIDYATQE LHLLLQHLAF FKSHPPNSNS 120 PDIINNVTPQ PPYPLEQQIP QEHQQQQQQQ QCFNYNLLQD DINMWTIQNA VPPLSPLSLE 180 NDINQDQDPV VDYGYDQKPG VLDLMDKIKS DDSSAQY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-23	9	101	12	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-23	9	101	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G349700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006595095.1	1e-161	LOB domain-containing protein 22
Swissprot	Q9LRW1	4e-43	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	I1M5B9	1e-159	I1M5B9_SOYBN; Uncharacterized protein
STRING	GLYMA13G42570.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59
Representative plant	OGRP5524	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	7e-44	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Glyma.13G349700.1.p
Entrez Gene	102668887

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]