PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G346300.5.p

Common Name

GLYMA_13G346300, LOC100812210

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 939aa MW: 103102 Da PI: 6.1555

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G346300.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.5	1.6e-29	554	604	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Glyma.13G346300.5.p 554 EKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGIPRWPSRKINKV 604 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	538	624	IPR003035	RWP-RK domain
Pfam	PF02042	4.9E-26	556	604	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.04E-21	834	923	No hit	No description
SMART	SM00666	5.5E-19	838	920	IPR000270	PB1 domain
PROSITE profile	PS51745	18.289	838	920	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.7E-22	839	920	No hit	No description
Pfam	PF00564	1.2E-14	841	919	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence Send to blast
MEYPFSPKDR VIGDWQSSGA QLEGSASLDG RMINSISEDM PNSFSELMNF DTYAGLCYSP 60 SITDQILANE LPSFAPLSYP LPDGFNPVQL NSGQCCMSGV GRNNNDTENS SLYGNYMMSR 120 PPGLSLDERM LRALSFFKES AGGGILAQVW VPIKDGDQFI LSTSEQPYLL DQMLAGYREV 180 SRTFTFSAEG KSGCSLGLPG RVFTSKVPEW TSNVGYYSMS EYLRFEHAIN HKVCGSIAFP 240 IFDLHSELPC CAVLELVTTN EKPDFDRELE IVCRALQLVN LRTAKPLRCL PQCLSNNKKA 300 TLTEIVDVLR SVCHAHRLPL GLTWIPCCFT ECSRGEASSI RIEGGHSTSR GKNILCLEES 360 ACYITDRAMG GFVRACMEHR LEEGKGIAGK ALQSNHPFFY PDVKTYDISE YPLVHHARKY 420 NLNAAVAIRL RSTYTNDDDY ILEFFLPVNM KGSSEQQLLL DNLSGTMQRI CSSLRTVSET 480 ELSGMESLAV GLGKKNAPSF FPLSSRNSEI PLINGDCDSV QKATNLRDNE IESSPNQERN 540 GSKRQVQKNR STSEKNVSLS VLQQYFSGSL KDAAKNIGVC PTTLKRICRQ HGIPRWPSRK 600 INKVNRSLKK IQTVLDSVQG VEGGLKVLDS VQGVEGVLKF DPSMGAFVAG GSIIQEIDAH 660 KSTIKDPVPV AQDAFSVRPA PCSEGENFSI KLEGKLKKTN VSSVNYSEDS KSMAINDGSC 720 QTASLCTKVQ DCPEQACLGS VLAKEHDKRI LNKGGLSVEK FKRNIVGQSS KTLIGDEMDI 780 GVDGDDGVVE RNHPTSSSLI DSSNGSGSMM HSSSSGSQSF KNQDQSKVKS TIVDSRSKLI 840 VKATYREDTI RFKFDPCAGC FSLYEEVAAR FKLQNGLFQL KYLDDEEEWV MLVNNADLQE 900 CIEILDDIGT RSVRFLVRDM PSVLGSSGSS NSYLGGSS*

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence Send to blast

MEYPFSPKDR VIGDWQSSGA QLEGSASLDG RMINSISEDM PNSFSELMNF DTYAGLCYSP  60
SITDQILANE LPSFAPLSYP LPDGFNPVQL NSGQCCMSGV GRNNNDTENS SLYGNYMMSR  120
PPGLSLDERM LRALSFFKES AGGGILAQVW VPIKDGDQFI LSTSEQPYLL DQMLAGYREV  180
SRTFTFSAEG KSGCSLGLPG RVFTSKVPEW TSNVGYYSMS EYLRFEHAIN HKVCGSIAFP  240
IFDLHSELPC CAVLELVTTN EKPDFDRELE IVCRALQLVN LRTAKPLRCL PQCLSNNKKA  300
TLTEIVDVLR SVCHAHRLPL GLTWIPCCFT ECSRGEASSI RIEGGHSTSR GKNILCLEES  360
ACYITDRAMG GFVRACMEHR LEEGKGIAGK ALQSNHPFFY PDVKTYDISE YPLVHHARKY  420
NLNAAVAIRL RSTYTNDDDY ILEFFLPVNM KGSSEQQLLL DNLSGTMQRI CSSLRTVSET  480
ELSGMESLAV GLGKKNAPSF FPLSSRNSEI PLINGDCDSV QKATNLRDNE IESSPNQERN  540
GSKRQVQKNR STSEKNVSLS VLQQYFSGSL KDAAKNIGVC PTTLKRICRQ HGIPRWPSRK  600
INKVNRSLKK IQTVLDSVQG VEGGLKVLDS VQGVEGVLKF DPSMGAFVAG GSIIQEIDAH  660
KSTIKDPVPV AQDAFSVRPA PCSEGENFSI KLEGKLKKTN VSSVNYSEDS KSMAINDGSC  720
QTASLCTKVQ DCPEQACLGS VLAKEHDKRI LNKGGLSVEK FKRNIVGQSS KTLIGDEMDI  780
GVDGDDGVVE RNHPTSSSLI DSSNGSGSMM HSSSSGSQSF KNQDQSKVKS TIVDSRSKLI  840
VKATYREDTI RFKFDPCAGC FSLYEEVAAR FKLQNGLFQL KYLDDEEEWV MLVNNADLQE  900
CIEILDDIGT RSVRFLVRDM PSVLGSSGSS NSYLGGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G346300.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU028318	0.0	EU028318.1 Glycine max clone BAC gmw1-45b2 genomic sequence.
GenBank	EU028319	0.0	EU028319.1 Glycine max clone BAC gmw1-91g6 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014621588.1	0.0	protein NLP9 isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	K7M3K9	0.0	K7M3K9_SOYBN; Uncharacterized protein
STRING	GLYMA13G42160.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G346300.5.p
Entrez Gene	100812210

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]