PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G346300.4.p

Common Name

GLYMA_13G346300, LOC100812210

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 982aa MW: 107832 Da PI: 6.0266

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G346300.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.4	1.7e-29	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Glyma.13G346300.4.p 597 EKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGIPRWPSRKINKV 647 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	581	667	IPR003035	RWP-RK domain
Pfam	PF02042	5.2E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.24E-21	877	966	No hit	No description
PROSITE profile	PS51745	18.289	881	963	IPR000270	PB1 domain
SMART	SM00666	5.5E-19	881	963	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.0E-22	882	963	No hit	No description
Pfam	PF00564	1.3E-14	884	962	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MEYPFSPKDR VIGDWQSSGA QLEGSASLDG RMINSISEDM PNSFSELMNF DTYAGLCYSP 60 SITDQILANE LPSFAPLSYP LPDGFNPVQL NSGQCCMSGV GRNNNDTENS SLYGEKVVCQ 120 QMDTLLGFLN DTNEANNLNS KLKINVSSQH LNNSDTGNYM MSRPPGLSLD ERMLRALSFF 180 KESAGGGILA QVWVPIKDGD QFILSTSEQP YLLDQMLAGY REVSRTFTFS AEGKSGCSLG 240 LPGRVFTSKV PEWTSNVGYY SMSEYLRFEH AINHKVCGSI AFPIFDLHSE LPCCAVLELV 300 TTNEKPDFDR ELEIVCRALQ LVNLRTAKPL RCLPQCLSNN KKATLTEIVD VLRSVCHAHR 360 LPLGLTWIPC CFTECSRGEA SSIRIEGGHS TSRGKNILCL EESACYITDR AMGGFVRACM 420 EHRLEEGKGI AGKALQSNHP FFYPDVKTYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTND 480 DDYILEFFLP VNMKGSSEQQ LLLDNLSGTM QRICSSLRTV SETELSGMES LAVGLGKKNA 540 PSFFPLSSRN SEIPLINGDC DSVQKATNLR DNEIESSPNQ ERNGSKRQVQ KNRSTSEKNV 600 SLSVLQQYFS GSLKDAAKNI GVCPTTLKRI CRQHGIPRWP SRKINKVNRS LKKIQTVLDS 660 VQGVEGGLKV LDSVQGVEGV LKFDPSMGAF VAGGSIIQEI DAHKSTIKDP VPVAQDAFSV 720 RPAPCSEGEN FSIKLEGKLK KTNVSSVNYS EDSKSMAIND GSCQTASLCT KVQDCPEQAC 780 LGSVLAKEHD KRILNKGGLS VEKFKRNIVG QSSKTLIGDE MDIGVDGDDG VVERNHPTSS 840 SLIDSSNGSG SMMHSSSSGS QSFKNQDQSK VKSTIVDSRS KLIVKATYRE DTIRFKFDPC 900 AGCFSLYEEV AARFKLQNGL FQLKYLDDEE EWVMLVNNAD LQECIEILDD IGTRSVRFLV 960 RDMPSVLGSS GSSNSYLGGS S*

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MEYPFSPKDR VIGDWQSSGA QLEGSASLDG RMINSISEDM PNSFSELMNF DTYAGLCYSP  60
SITDQILANE LPSFAPLSYP LPDGFNPVQL NSGQCCMSGV GRNNNDTENS SLYGEKVVCQ  120
QMDTLLGFLN DTNEANNLNS KLKINVSSQH LNNSDTGNYM MSRPPGLSLD ERMLRALSFF  180
KESAGGGILA QVWVPIKDGD QFILSTSEQP YLLDQMLAGY REVSRTFTFS AEGKSGCSLG  240
LPGRVFTSKV PEWTSNVGYY SMSEYLRFEH AINHKVCGSI AFPIFDLHSE LPCCAVLELV  300
TTNEKPDFDR ELEIVCRALQ LVNLRTAKPL RCLPQCLSNN KKATLTEIVD VLRSVCHAHR  360
LPLGLTWIPC CFTECSRGEA SSIRIEGGHS TSRGKNILCL EESACYITDR AMGGFVRACM  420
EHRLEEGKGI AGKALQSNHP FFYPDVKTYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTND  480
DDYILEFFLP VNMKGSSEQQ LLLDNLSGTM QRICSSLRTV SETELSGMES LAVGLGKKNA  540
PSFFPLSSRN SEIPLINGDC DSVQKATNLR DNEIESSPNQ ERNGSKRQVQ KNRSTSEKNV  600
SLSVLQQYFS GSLKDAAKNI GVCPTTLKRI CRQHGIPRWP SRKINKVNRS LKKIQTVLDS  660
VQGVEGGLKV LDSVQGVEGV LKFDPSMGAF VAGGSIIQEI DAHKSTIKDP VPVAQDAFSV  720
RPAPCSEGEN FSIKLEGKLK KTNVSSVNYS EDSKSMAIND GSCQTASLCT KVQDCPEQAC  780
LGSVLAKEHD KRILNKGGLS VEKFKRNIVG QSSKTLIGDE MDIGVDGDDG VVERNHPTSS  840
SLIDSSNGSG SMMHSSSSGS QSFKNQDQSK VKSTIVDSRS KLIVKATYRE DTIRFKFDPC  900
AGCFSLYEEV AARFKLQNGL FQLKYLDDEE EWVMLVNNAD LQECIEILDD IGTRSVRFLV  960
RDMPSVLGSS GSSNSYLGGS S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G346300.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU028318	0.0	EU028318.1 Glycine max clone BAC gmw1-45b2 genomic sequence.
GenBank	EU028319	0.0	EU028319.1 Glycine max clone BAC gmw1-91g6 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006595076.1	0.0	protein NLP8 isoform X1
Refseq	XP_006595077.1	0.0	protein NLP8 isoform X1
Refseq	XP_006595078.1	0.0	protein NLP8 isoform X1
Refseq	XP_006595079.1	0.0	protein NLP8 isoform X1
Refseq	XP_014621587.1	0.0	protein NLP8 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	K7M3K8	0.0	K7M3K8_SOYBN; Uncharacterized protein
STRING	GLYMA13G42160.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G346300.4.p
Entrez Gene	100812210

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]