PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G345200.1.p
Common NameGLYMA_13G345200, LOC778194
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 429aa    MW: 46948.9 Da    PI: 6.8025
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G345200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.7e-10230288563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l se+
  Glyma.13G345200.1.p 230 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSEN 288
                          9***********************************************99988888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-15226290IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013228291IPR004827Basic-leucine zipper domain
PfamPF001704.0E-9230288IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11230281No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-10230285No hitNo description
CDDcd147038.67E-26231280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDKDKSLGLP PPSGRYSGYS PTRSVFNVKS EPSPSSSSTT SYPPLALGTT SSESSHFGHG  60
MSTDSSGFSH DISRMPDNPP RNRGHRRAHS EILTLPDDIS FDSDLGVVGA GDGPSFSDDA  120
EEDLLSMYLD MDKFNSSSAT STFQMGEPSN AVGASASTPG SGAPNYSAEN VVFGTIERPR  180
VRHQHSQSMD GSTTIKPELL VSGSEDMSAA DSKKAISAAK LAELALIDPK RAKRIWANRQ  240
SAARSKERKM RYIAELERKV QTLQTEATSL SAQLTLLQRD TNGLNSENSE LKLRLQTMEQ  300
QVHLQDALND ALKEEIQHLK ILTGQVMAPN GGPMMKLASF GGGQQFYPNN HVMHTLLAAQ  360
QFQQLQIHPQ KQQQQQHQHQ FQQFQQQHQH QHQQHQQSSD LKMRETSPTP CPKDNTSSDV  420
NPSGAKDC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.142900.0cotyledon| meristem| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G345200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-147AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543567.10.0probable transcription factor PosF21
SwissprotQ040881e-149POF21_ARATH; Probable transcription factor PosF21
TrEMBLI1M5710.0I1M571_SOYBN; Uncharacterized protein
STRINGGLYMA13G42030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-149bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  3. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]