PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G337400.1.p | ||||||||
Common Name | GLYMA_13G337400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 744aa MW: 84066.1 Da PI: 5.8894 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.5 | 2e-116 | 368 | 740 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+avss+d++ a++lL+++++++s gd+ qRla+y+++AL+arl++ ++++ ++ + ++ ++++ l a+++f ++P+ Glyma.13G337400.1.p 368 LRTLLILCAQAVSSSDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVG--DGTATQIFYMSYKKFTTTDFLRAYQVFISACPF 455 5789**************************************************9..555444544444445699*************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 kf+h+ aN++I++ ++g+e++HiiDf+i +G+QWp L++ L+ Rp+gpp+lRiTg++ p++g +e++eetg+rLak++++++vpfe+ Glyma.13G337400.1.p 456 KKFAHFFANKMIMKTADGAETLHIIDFGILYGFQWPILIKFLSRRPGGPPKLRITGIEYPQPGfrPTERIEETGRRLAKYCKRFNVPFEY 545 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ++++++++e++++e+L+++++E laVn+ ++ ++lldes +++s+r++vL+l+++++P+++v++ + ++n++ Fl+rf eal +ys+++ Glyma.13G337400.1.p 546 KAIASRNWETIQIEDLKIERNELLAVNCLVRFKNLLDESIEVNSPRNAVLNLIRKMKPDIFVHSVVNGSYNAPFFLTRFREALFHYSSIY 635 **9999************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d++++ ++re+e+r ++Ere+lgrei+nvvace er+er et+++W++r ++aGFk++pl+++++++ + lr+ + + + +e+ +++ Glyma.13G337400.1.p 636 DMFDTLISRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQARNTRAGFKQLPLDKEIMTKFRGKLREWYHRDFVFDEDGNWM 725 *****************************************************************************999********** PP GRAS 359 vlgWkdrpLvsvSaW 373 ++gWk+r L++ ++W Glyma.13G337400.1.p 726 LQGWKGRILYASTCW 740 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.259 | 342 | 721 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-114 | 368 | 740 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MLVFSFPPYA LVLFHISLAS MDPNFIISGY DFDESNHWDL NGHYANLLND AFSDVGPLGL 60 SQNAILNSEP FVSSSGSAAT DPAATTATLA DPSPEEDTDF SETFKFISQI LLEENFEQKP 120 CMCYDPLTLQ HTEKSFYEAL ELEPSLPLSP NQHPLESPDG NSSNSISDSA NSHDLKPSSP 180 NTPVSDALHS SSHAPSFVVP PHALNKINDG TVDLDSSVTK LLAENIFSDT DSMLQFKRGL 240 EEASKFLPRR PQLFTGLEST AVSAEPKGKG VALKMENSIG VRSRKNHARQ DEEEEEERSN 300 KQSAVSAVCV EEESEISEIF DRVLLSVENV PLCAEKNGSV AQAEKSNLSD GGKVRSKRQG 360 RKKETVDLRT LLILCAQAVS SSDNRTANEL LKQIRQHSSA LGDASQRLAH YVANALEARL 420 VGDGTATQIF YMSYKKFTTT DFLRAYQVFI SACPFKKFAH FFANKMIMKT ADGAETLHII 480 DFGILYGFQW PILIKFLSRR PGGPPKLRIT GIEYPQPGFR PTERIEETGR RLAKYCKRFN 540 VPFEYKAIAS RNWETIQIED LKIERNELLA VNCLVRFKNL LDESIEVNSP RNAVLNLIRK 600 MKPDIFVHSV VNGSYNAPFF LTRFREALFH YSSIYDMFDT LISRENEWRL MLEREFLGRE 660 IMNVVACEAL ERVERPETYK QWQARNTRAG FKQLPLDKEI MTKFRGKLRE WYHRDFVFDE 720 DGNWMLQGWK GRILYASTCW VPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-49 | 351 | 742 | 1 | 379 | Protein SCARECROW |
5b3h_D | 3e-49 | 351 | 742 | 1 | 379 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G337400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025981534.1 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC100779806 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | K7M3F6 | 0.0 | K7M3F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G41240.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G337400.1.p |
Publications ? help Back to Top | |||
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