PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G337300.1.p
Common NameGLYMA_13G337300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 622aa    MW: 70892 Da    PI: 6.4741
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G337300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.12.2e-842766181373
                 GRAS   1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                          l++lL+ cA+av+s ++ + a++l++++++++sp gd +q la+yf +AL+arl +++ ++y+ l++++t    +++ ++a++++  v+P
  Glyma.13G337300.1.p 276 LRTLLMLCAQAVASaSSPSFAKQLVKQIKQNSSPIGDETQMLAHYFGNALEARLDGTGYQVYSVLSSKRTF---VKDMIKAYHVYASVCP 362
                          5789********9946678*******************************************999999888...9*************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                          + k++ + aN+ I + +e++e++Hii f+i +G++ p L   L+ R++gpp+lRiTg++ p++g   ++++ etg+rLa+++++++vpfe
  Glyma.13G337300.1.p 363 FEKIAVMFANNYIRNLTEEAETIHIIEFGIRYGFKGPGLVGHLSRRAGGPPKLRITGIDLPQPGlrPRQRVLETGRRLANYCKRFNVPFE 452
                          *****************************************************************99*********************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          fn+ +a+r++++++++L+++++E +aVn+++q ++llde+v l+++rd+vL+l+k+ +P+++v+   + +++ + F+  f eal +y+al
  Glyma.13G337300.1.p 453 FNA-MAQRWDTIKVDDLKIQRNEFVAVNCMFQFEHLLDETVVLNNPRDAVLRLIKNANPDIFVHGIVNGSYDVPFFVSWFREALFHYTAL 541
                          ***.8************************************************************************************* PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          fd+l+++             el+greivn++aceg+er+er +t+++W+ r ++ G++  +++                + + +e + ++
  Glyma.13G337300.1.p 542 FDMLDTN-------------ELFGREIVNIIACEGFERVERAQTYKQWQLRNMRNGLRDDAYN----------------NNFLLEVDGDW 602
                          *******.............79******************************99999864433................44777888889 PP

                 GRAS 358 lvlgWkdrpLvsvSaW 373
                          +++gWk+r L++ S+W
  Glyma.13G337300.1.p 603 VLQGWKGRILYASSCW 618
                          9999999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.427250615IPR005202Transcription factor GRAS
PfamPF035147.6E-82276618IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MHTYPKNEFL LFLLVRWIRV SSINISKEDE SDVSAVLGYI KQMLMEDNTE ENYSMFHDSL  60
ALQDTQRSFY EVITHNHNYP SSSTHHHVHN YLSVESPDQS LSCTSSSAES QWRNLDHIPD  120
SFVFHSNSTT NMNTGFGFFN DSLQAGFLDS TFLQKFQRGV DQGTQFLPKH TPFIIAPSFT  180
KAPHLVIKTE AEEGDHFRTV SGGRKIRERE ENEADERSRK QSAPYMDDSE QSELFDKVLI  240
GTGLGKGVPP NTTHETILTN MFGGDVRKSD GEVVDLRTLL MLCAQAVASA SSPSFAKQLV  300
KQIKQNSSPI GDETQMLAHY FGNALEARLD GTGYQVYSVL SSKRTFVKDM IKAYHVYASV  360
CPFEKIAVMF ANNYIRNLTE EAETIHIIEF GIRYGFKGPG LVGHLSRRAG GPPKLRITGI  420
DLPQPGLRPR QRVLETGRRL ANYCKRFNVP FEFNAMAQRW DTIKVDDLKI QRNEFVAVNC  480
MFQFEHLLDE TVVLNNPRDA VLRLIKNANP DIFVHGIVNG SYDVPFFVSW FREALFHYTA  540
LFDMLDTNEL FGREIVNIIA CEGFERVERA QTYKQWQLRN MRNGLRDDAY NNNFLLEVDG  600
DWVLQGWKGR ILYASSCWVP A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-362676209379Protein SCARECROW
5b3h_D4e-362676209379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G337300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981676.10.0scarecrow-like protein 14
RefseqXP_028202214.10.0scarecrow-like protein 14 isoform X1
SwissprotQ9XE581e-180SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0R0H4U70.0A0A0R0H4U7_SOYBN; Uncharacterized protein
STRINGGLYMA13G41231.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]