PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G337200.1.p
Common NameGLYMA_13G337200, LOC100793066
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 645aa    MW: 73440 Da    PI: 6.2118
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G337200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3611.7e-1102706411373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+a++s++ + a++l++++ +++sp+ + +qRla+yf +AL+arl +++ ++++al++++ts    ++ ++a++++  v+P+
  Glyma.13G337200.1.p 270 LRTLLMLCAQAIASDNPSSAKQLVKQIMQHSSPTCNETQRLAHYFGNALEARLDGTGYKVCSALSSKRTS---AKDMIKAYHVYASVCPF 356
                          5789***************************************************999999999999998...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k++ + aN+ I +    ++++HiiDf+i +G++WpaL+  L+ R++gpp+lRiTg++ p++g   +e++ etg+rLa+f+++++vpfef
  Glyma.13G337200.1.p 357 EKLAIIFANNSIWNPSVDAKAIHIIDFGIRYGFKWPALISRLSRRSGGPPKLRITGIDVPQPGlrPQERVLETGRRLANFCKRFNVPFEF 446
                          *****************************************************************9************************ PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +a+r++++++e+L+++p+E +aVn+ +q ++llde+v l++ rd+vL+l+k+ +P+++v+   + +++ + F+ rf eal +y+alf
  Glyma.13G337200.1.p 447 NA-IAQRWDTIRVEDLKIEPNEFVAVNCLFQFEHLLDETVVLNNSRDAVLRLIKNANPDIFVHGIVNGSYDVPFFVSRFREALFHYTALF 535
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d+l+++++r++  r + E+el+greivn++aceg+er+er +t+++W+ r ++ GF+ +pl++++  + k  lr  + ++ + +e + ++
  Glyma.13G337200.1.p 536 DMLDTNVARQDPMRLMFEKELFGREIVNIIACEGFERVERPQTYKQWQLRNMRNGFRLLPLDHRIIGKLKDRLRDDAhNNNFLLEVDGDW 625
                          *************************************************************************99887999********* PP

                 GRAS 358 lvlgWkdrpLvsvSaW 373
                          +++gWk+r L++ S+W
  Glyma.13G337200.1.p 626 VLQGWKGRILYASSCW 641
                          **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.064244621IPR005202Transcription factor GRAS
PfamPF035145.9E-108270641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MMNATNDEES CLDKSVLSYI KQMLMEDDTE ERYSMFHDSL ALQHTERSFL EAINHNYPSP  60
SYSSSTHYHL DNYPSVDSPE PCLSACSADN ITFSASSSCA SNNTTSSSEF PLRSLYPLLP  120
DTTDEFVFHS NSTQSTINTP FGFFDNPLAE IFERRVDLGT LFLPANTPFS SSFTKVPHVV  180
IKTEAEEGDH FLTGRKQRER EEYEAADGRS RKQSAAHMDE SELSELFDKV VLGTDLRKRV  240
PPNTTHKTTI LTNMLYGGDV WENDDQVVDL RTLLMLCAQA IASDNPSSAK QLVKQIMQHS  300
SPTCNETQRL AHYFGNALEA RLDGTGYKVC SALSSKRTSA KDMIKAYHVY ASVCPFEKLA  360
IIFANNSIWN PSVDAKAIHI IDFGIRYGFK WPALISRLSR RSGGPPKLRI TGIDVPQPGL  420
RPQERVLETG RRLANFCKRF NVPFEFNAIA QRWDTIRVED LKIEPNEFVA VNCLFQFEHL  480
LDETVVLNNS RDAVLRLIKN ANPDIFVHGI VNGSYDVPFF VSRFREALFH YTALFDMLDT  540
NVARQDPMRL MFEKELFGRE IVNIIACEGF ERVERPQTYK QWQLRNMRNG FRLLPLDHRI  600
IGKLKDRLRD DAHNNNFLLE VDGDWVLQGW KGRILYASSC WVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-482746418374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.396420.0meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G337200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542035.10.0scarecrow-like protein 14
RefseqXP_014621572.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLI1M4X60.0I1M4X6_SOYBN; Uncharacterized protein
STRINGGLYMA13G41220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]