PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G329000.1.p

Common Name

GLYMA_13G329000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 286aa MW: 31592.3 Da PI: 8.62

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G329000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.8	3.2e-40	24	83	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s Glyma.13G329000.1.p 24 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSS 83 6899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	22	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-34	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.189	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MNPSSGQPQQ MSSQSVEKKP KPHPEQALKC PRCDSTNTKF CYYNNYSLSQ PRYFCKSCRR 60 YWTKGGTLRN VPVGGGCRKK RSSSLKRAQD QTLTPNLNPL TTLPHLSYDS NDFTLAVARF 120 QKQSSGQLGY NDRDLSTLGN PTTGSFCDIL GNSGMNPSSA NPSFLDAIRT GFLETQNHLQ 180 NLYCMYGNGD LGEVDNGNSG VVGVSGEMML PYDQVIMSNA TTQSVSVMKQ EMCSRREQSE 240 RRVLGGFPWQ INADTNIGEL DSGRTIASWN SFTNSWHGFL QSPLM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28678	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G329000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857261	0.0	DQ857261.1 Glycine max Dof11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028188641.1	0.0	dof zinc finger protein DOF5.3-like
TrEMBL	I1M4N9	0.0	I1M4N9_SOYBN; Uncharacterized protein
STRING	GLYMA13G40420.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-38	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Glyma.13G329000.1.p