PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G327500.3.p
Common NameGLYMA_13G327500, LOC100811687
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 510aa    MW: 57065.8 Da    PI: 8.734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G327500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-057092123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Glyma.13G327500.3.p 70 FICEVCNKGFQRDQNLQLHRRGH 92
                         89*******************88 PP
2zf-C2H211.20.0012147169123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H + +
  Glyma.13G327500.3.p 147 WKCDKCSKKYAVQSDWKAHNKIC 169
                          58*****************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.67E-76992No hitNo description
SMARTSM003550.0267092IPR015880Zinc finger, C2H2-like
PfamPF121717.3E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8667092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355180112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4135167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.67E-7142167No hitNo description
SMARTSM00355170147167IPR015880Zinc finger, C2H2-like
PROSITE profilePS500966.54498509IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MMSQEAISVP SNNLRDPSVQ LHEPNSNSNS NPNNPNPNSL KRKRSLPGTP DPNAEVIALS  60
PKSLMATNRF ICEVCNKGFQ RDQNLQLHRR GHNLPWKLRQ RNKEEVVKKK VYVCPEKSCV  120
HHDPCRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHNKICG TRQYKCDCGT  180
IFSRKDSFVT HGAFCDAMAE QNARLPAVLS NLGSEILMNA AQGPRVMPQA LQLHGFHNSE  240
FGGPGSEPYM GNFADVNHVE HNKLRMPLWL DQTNNIPLQL NHHHHHHPLS VSSNNSSSLF  300
SPGTTLAEAN NMFGTSSSSQ GQWLNYRYHP EASFTHANVS IPHGLKLEQE ENKGDLSHSV  360
SSLYQSHMEP TRMSGGNNNL AFDNSNFGLL DPNMSSTSSN NNNRYNNNVV EIQKLFKQGN  420
QAVENFNHMV NSQASTNNII GGGFSLSSTK GLEHMVMPRI EEWESGEPEI MQKQQLRSST  480
SNATEEHLTK DFMGIGPVIN LQSQFRGHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33143211371Zinc finger protein JACKDAW
5b3h_F4e-33143211371Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.384520.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G327500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979400.0BT097940.1 Soybean clone JCVI-FLGm-22B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543476.10.0protein indeterminate-domain 9
RefseqXP_028191537.10.0zinc finger protein BALDIBIS-like
TrEMBLA0A445IDI10.0A0A445IDI1_GLYSO; Protein indeterminate-domain 2 isoform A
TrEMBLI1M4M20.0I1M4M2_SOYBN; Uncharacterized protein
STRINGGLYMA13G40240.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-88C2H2-like zinc finger protein