PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G325200.1.p
Common NameGLYMA_13G325200, LOC100808472
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 671aa    MW: 73760.5 Da    PI: 7.7423
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G325200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24110211199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF 
  Glyma.13G325200.1.p 110 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIARDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL 197
                          89****************************986445444..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Glyma.13G325200.1.p 198 --RAENGDLCVGIRRA 211
                          ..4488999****997 PP
2Auxin_resp1132.9e-37262345183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++ a+++++FevvY+Pra t+eF+++++ v+ a++++++ GmRfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  Glyma.13G325200.1.p 262 AVTLAASNQAFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVLDPIRWPNSPWRLLQ 345
                          678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-38102213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-29105211IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-22109210No hitNo description
PROSITE profilePS5086313.169110212IPR003340B3 DNA binding domain
SMARTSM010191.6E-23110212IPR003340B3 DNA binding domain
PfamPF023622.9E-22110211IPR003340B3 DNA binding domain
PfamPF065075.1E-32262345IPR010525Auxin response factor
PROSITE profilePS5174518.034557637IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MKETDKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNVDFGAA RIPIPPLILC  60
RVAAVKFLAD PETDEVFARL RLVPLRNSEL DYEDSDANGE AEGSEKPASF AKTLTQSDAN  120
NGGGFSVPRY CAETIFPRLD YSAEPPVQTV IARDVHGEVW KFRHIYRGTP RRHLLTTGWS  180
SFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGGVGGPE GPCGWSSYGS GGLGLGPYGA  240
FSGFMREESG RAKVSGESVR EAVTLAASNQ AFEVVYYPRA NTPEFCIRTS AVRGAMRIQW  300
CSGMRFKMPF ETEDSSRISW FMGTIASVQV LDPIRWPNSP WRLLQVSWDE PDLLHNVKRV  360
SPWLVELVSN VPIIHLAAFS PPRKKLRFPL DVQFPIPSFS GNPFGSSSSS SPFCCLSDNA  420
PAGIQGARHS QIGISLSDLH LNNKLQLGLL PTKVHQLNLH AGISNAKSKE SLSSLLSMGN  480
SNMTLEKSDH VKRHHFLLFG QPILTEQQIS RSSSDVATDD ENKEKKKKGF LSDSQSSVSP  540
GNLSSTAEFS WQLGSDTSHC KVFMESEDVG RTLDLSCLSS YQELYMRLAN MFGIERSDML  600
SHVLYCDSSG ALKQIGEEPF SEFMKTAKRL TILTDSNNKD SRRVWITGTR NAEHGLDAAS  660
NKTGPLSIFA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-84836651388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.85820.0hypocotyl| leaf| pod| seed coat| somatic embryo| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G325200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543470.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLI1M4J80.0I1M4J8_SOYBN; Auxin response factor
STRINGGLYMA13G40030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]