PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G324200.3.p

Common Name

GLYMA_13G324200, LOC100809720

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TALE

Protein Properties

Length: 787aa MW: 86400.3 Da PI: 6.9342

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G324200.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	593	630	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Glyma.13G324200.3.p 593 FEHflHPYPTDTDKHMLASQTGLSRNQVSNWFINARVR 630 665559******************************87 PP
2	BELL	99.5	2.7e-32	439	509	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r + q kkakLl ++eeV ++ kqy+ q+q+v+ssFe vaglgsa+pY+ +Alk +S+hFrcLk+ i++q+ Glyma.13G324200.3.p 439 RSDYQHKKAKLLYMQEEVSRQCKQYHLQMQMVVSSFESVAGLGSATPYIPMALKSVSKHFRCLKNSISDQL 509 6789****************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.9E-42	347	507	IPR006563	POX domain
Pfam	PF07526	1.5E-40	352	506	IPR006563	POX domain
PROSITE profile	PS50071	12.001	571	634	IPR001356	Homeobox domain
SMART	SM00389	5.0E-9	574	638	IPR001356	Homeobox domain
CDD	cd00086	6.13E-12	574	635	No hit	No description
SuperFamily	SSF46689	6.84E-17	576	640	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-27	577	638	IPR009057	Homeodomain-like
Pfam	PF05920	3.5E-18	591	630	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MSNLRPESHV AQQIRREKLR IQNSYQPSHE FPNNLEQLSL HPGFNNLDLV QVRNVRNANM 60 LDELAVYSSE MPNFSTSSSA ARNALEYHQE QGAAAEPSNR LLLMNQYGSF PHSMSAIHSS 120 HKQQCELRNL GNWRNSTPHQ GSDWFVNYAS NANSFLSAEL NNNVSAYNEL MDVHCSNASG 180 EISGREMHKQ GVLHHNSPPS SPLYQNALQD IVKSASFSAH TRQDMASLMQ QNEHSIWVGN 240 ASEAELQQPS YESQPNHELR FGWTNRTIAC DSLPQSLSLS LSSNAQPKPS VSHLEQGSAS 300 DDPQCLKHMK SIVSRDCGKS VQDQVEIPSK STTTITYRSV GPLGPFTGYA TILKSSRFLK 360 SAQQLLDEIC CLSDAKFGKS YDVSKRVSPE VSASTSADTV TGVAAKGSNS GSSSTTLYNV 420 SKENRADPGV GSSFGLSSRS DYQHKKAKLL YMQEEVSRQC KQYHLQMQMV VSSFESVAGL 480 GSATPYIPMA LKSVSKHFRC LKNSISDQLK LISEALGEDL SIPCSTSTCS NKADTTTMAR 540 VRCGSSMDQS FFLKNKCVKG TTELLDEPPQ QHVWRPQRGL PERAVAILKA WLFEHFLHPY 600 PTDTDKHMLA SQTGLSRNQV SNWFINARVR VWKPMVEEIH TLETKATGSK DNCGINEGTS 660 SATGGDTSHP RALGNIGLNS IPETQFQGID MGSSIAANAE ESGLNPEQWS QEKRSKLECQ 720 VTSTMDGTLM GFVPYRHGGV EVGGLGSVSL TLGLSHGVEG VQNQQQLQEE QLRHDVGGHM 780 IHEFVG*

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MSNLRPESHV AQQIRREKLR IQNSYQPSHE FPNNLEQLSL HPGFNNLDLV QVRNVRNANM  60
LDELAVYSSE MPNFSTSSSA ARNALEYHQE QGAAAEPSNR LLLMNQYGSF PHSMSAIHSS  120
HKQQCELRNL GNWRNSTPHQ GSDWFVNYAS NANSFLSAEL NNNVSAYNEL MDVHCSNASG  180
EISGREMHKQ GVLHHNSPPS SPLYQNALQD IVKSASFSAH TRQDMASLMQ QNEHSIWVGN  240
ASEAELQQPS YESQPNHELR FGWTNRTIAC DSLPQSLSLS LSSNAQPKPS VSHLEQGSAS  300
DDPQCLKHMK SIVSRDCGKS VQDQVEIPSK STTTITYRSV GPLGPFTGYA TILKSSRFLK  360
SAQQLLDEIC CLSDAKFGKS YDVSKRVSPE VSASTSADTV TGVAAKGSNS GSSSTTLYNV  420
SKENRADPGV GSSFGLSSRS DYQHKKAKLL YMQEEVSRQC KQYHLQMQMV VSSFESVAGL  480
GSATPYIPMA LKSVSKHFRC LKNSISDQLK LISEALGEDL SIPCSTSTCS NKADTTTMAR  540
VRCGSSMDQS FFLKNKCVKG TTELLDEPPQ QHVWRPQRGL PERAVAILKA WLFEHFLHPY  600
PTDTDKHMLA SQTGLSRNQV SNWFINARVR VWKPMVEEIH TLETKATGSK DNCGINEGTS  660
SATGGDTSHP RALGNIGLNS IPETQFQGID MGSSIAANAE ESGLNPEQWS QEKRSKLECQ  720
VTSTMDGTLM GFVPYRHGGV EVGGLGSVSL TLGLSHGVEG VQNQQQLQEE QLRHDVGGHM  780
IHEFVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-15	580	637	1	58	Homeobox protein Meis1
4xrs_B	1e-15	580	637	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G324200.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006594969.1	0.0	BEL1-like homeodomain protein 9
Refseq	XP_006594970.1	0.0	BEL1-like homeodomain protein 9
Refseq	XP_014621537.1	0.0	BEL1-like homeodomain protein 9
TrEMBL	K7M356	0.0	K7M356_SOYBN; Uncharacterized protein
STRING	GLYMA13G39901.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	6e-78	BEL1-like homeodomain 8

Link Out ? help Back to Top
Phytozome	Glyma.13G324200.3.p
Entrez Gene	100809720