PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G321900.1.p
Common NameGLYMA_13G321900, Glyma13g39620.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 316aa    MW: 33985.3 Da    PI: 8.364
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G321900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073127149123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Glyma.13G321900.1.p 127 YECKTCNRTFPSFQALGGHRASH 149
                          99**********99999998887 PP
2zf-C2H213.20.00027224246123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Glyma.13G321900.1.p 224 HECSICGSEFTSGQALGGHMRRH 246
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-8126149No hitNo description
PfamPF139122.9E-13126151IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305127154IPR007087Zinc finger, C2H2
SMARTSM003550.052127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-8219246No hitNo description
PROSITE profilePS5015710.076224251IPR007087Zinc finger, C2H2
PfamPF139122.3E-11224248IPR007087Zinc finger, C2H2
SMARTSM003550.019224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MLSQMDMEEL VSCNNNDATN IAKGKRTKRR LRPLSPCAVV PTTTTITTVT AATTPIMTSS  60
CSSASCGGGS SSSTTFEEEE EDMANCLILL AQGKVGGDPP HRHKDLYGSD VKTEKLGSTK  120
VDHFYVYECK TCNRTFPSFQ ALGGHRASHK KPKVEEKKSS SPPLSLPPPP PPPPPSSSSL  180
FNFEEAKQSH HMKNIISPSV SLQLGCGNNN KVGLNFHGNK SKIHECSICG SEFTSGQALG  240
GHMRRHRAST NNNNIVQTTT TTSNGAVDVK PRNVLELDLN LPAPEDDLRD SKFQFPATQN  300
SMMRSAAPAL VGCHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.134090.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G321900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311510.0KT031151.1 Glycine max clone HN_CCL_218 C2H2-Zn transcription factor (Glyma13g39620.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304592.20.0C2H2-Zn transcription factor
RefseqXP_028188100.10.0zinc finger protein ZAT5-like
TrEMBLA0A445ID090.0A0A445ID09_GLYSO; Zinc finger protein ZAT5
TrEMBLI1M4G20.0I1M4G2_SOYBN; C2H2-Zn transcription factor
STRINGGLYMA13G39620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-52C2H2 family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]