PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G318500.1.p
Common NameGLYMA_13G318500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 244aa    MW: 26848.3 Da    PI: 7.8741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G318500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-1676126155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++   ++Wv+e+r+p   +k+ r++lg++ ++e+Aa+a++ a ++l+g
  Glyma.13G318500.1.p  76 PVYRGVRQRN-GNKWVCEVREP---NKKSRIWLGTYPSPEMAARAHDVAVLALKG 126
                          68*****999.9******9998...347**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1276126IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2077136IPR016177DNA-binding domain
PROSITE profilePS5103221.31177134IPR001471AP2/ERF domain
SMARTSM003801.7E-2677140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2877136IPR001471AP2/ERF domain
PRINTSPR003674.0E-77889IPR001471AP2/ERF domain
CDDcd000182.65E-2778136No hitNo description
PRINTSPR003674.0E-7100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDVTMKKVES ESPYYCSSSS PSSTSSESKL SSASPCNPNS PPDPSSWHAE TSKKVVVLIP  60
HKRKAGRKKF RETRHPVYRG VRQRNGNKWV CEVREPNKKS RIWLGTYPSP EMAARAHDVA  120
VLALKGTSAV FNFPDSVSLL PVANSSSAAD IRLAASKVSS VFGPSSSSSS RVETKPCLVD  180
GFVKTENNVD EVKTVFFDEE AFYNMPVFLD SMAEALLITP PSMKRAFDWD EVDCETDLTL  240
WTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12751391277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G318500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-84AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186649.11e-177dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI47e-54DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z57e-54DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0R0GWT91e-177A0A0R0GWT9_SOYBN; Uncharacterized protein
STRINGGLYMA13G39540.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-51C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]