PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G309200.1.p | ||||||||
Common Name | GLYMA_13G309200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 480aa MW: 53069.5 Da PI: 6.1664 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.1e-18 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l ++vk++G g+W+++ + g+ R++k+c++rw ++l Glyma.13G309200.1.p 26 KGPWTPEEDAILMEYVKKHGEGNWNSVQKNSGLLRCGKSCRLRWANHL 73 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++ ++d++ +lG++ W++ a+ ++ gRt++++k++w++ Glyma.13G309200.1.p 79 KGAFSPEEEQVIIDLHSKLGNK-WARMAAQLP-GRTDNEIKNFWNT 122 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.641 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-30 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-15 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-17 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-25 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.47E-12 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 24.966 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 79 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-10 | 81 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 81 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MARTVSNNDD ETAAKEEGEV KDGVRKGPWT PEEDAILMEY VKKHGEGNWN SVQKNSGLLR 60 CGKSCRLRWA NHLRPNLKKG AFSPEEEQVI IDLHSKLGNK WARMAAQLPG RTDNEIKNFW 120 NTRMKRRQRA GLPIYPPEVH AEANAYHLQH HRYLEQQQPP PYSSSSFSLL LSSCYPKKLN 180 DPNQIHHHSS ANPMQNQPDH SADRSINPSQ QFKFSNENST GNNGNFAFPM SPLSPYGSSS 240 STLLNHSFGG DHGGFIAGSP YEQPFPLVQG STTDISSNQT PTPASSYASG VDGLMGASSM 300 VNNNNNNNDY YEVAPLSPHQ GNSGLLDALV MEAQGLYHNE KSRSEEDLNL AGKLSCKRKN 360 MEYAEEGGTV PAGVSAMKKN SGNSSNESQR DDDISSSQLS KGKKQIGEDP LEEMNGMDDD 420 LVSLLNQFPL EMPMPEWYRR GENQSLGLEN QPKASSPDPA DHEHAWTLGT CWNNMPRIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 26 | 127 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G309200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541947.3 | 0.0 | transcription factor MYB101 | ||||
Refseq | XP_028189480.1 | 0.0 | transcription factor MYB101-like | ||||
TrEMBL | A0A445ICA6 | 0.0 | A0A445ICA6_GLYSO; Transcription factor MYB101 | ||||
TrEMBL | K7M2W6 | 0.0 | K7M2W6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G38521.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9949 | 32 | 40 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-80 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G309200.1.p |