PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G302400.1.p
Common NameGLYMA_13G302400, LOC102668351
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 325aa    MW: 36130.5 Da    PI: 6.3063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G302400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd+ll ++++ +G+g+W+tI++  g+ R++k+c++rw +yl
  Glyma.13G302400.1.p 14 KGPWTSEEDLLLTNYIQTHGPGNWRTIPKNAGLQRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding53.65.1e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Glyma.13G302400.1.p  67 RGRFSFEEEEAIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.089961IPR017930Myb domain
SuperFamilySSF466892.62E-3111108IPR009057Homeodomain-like
SMARTSM007172.9E-141363IPR001005SANT/Myb domain
PfamPF002491.9E-161461IPR001005SANT/Myb domain
CDDcd001674.11E-121661No hitNo description
PROSITE profilePS5129425.24462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2665116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1567111IPR001005SANT/Myb domain
CDDcd001671.48E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRAPCCDKN GLKKGPWTSE EDLLLTNYIQ THGPGNWRTI PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HVRKRLLRTG  120
IDPVTHAPRL DLLDISSILR SAIGNVNPSI LNLQGLLGAQ ALMNPEFLKL AATATLLSLK  180
NNENPSNLVS QVQQQFNSAG NCLVQNQVAA PNDPFQTPTH VNNGLSSSSP ENSILSHLGE  240
NNNYQLNAQQ INQVDLLLDH ELEHYLNCVN QNIGYESVTP LSTPTPLNSS STYVNSSTEE  300
ERDTYCSDIF KLEIPESLDI SDFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-29121162105C-Myb DNA-Binding Domain
1msf_C2e-29121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G302400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150405e-48AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595453.10.0transcription factor MYB41
RefseqXP_028187353.10.0transcription factor MYB41-like
SwissprotQ9LDR81e-100MY102_ARATH; Transcription factor MYB102
TrEMBLA0A445IC400.0A0A445IC40_GLYSO; Transcription factor MYB102
TrEMBLI1M3Y20.0I1M3Y2_SOYBN; Uncharacterized protein
STRINGGLYMA13G37820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.18e-85myb domain protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]