PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G292500.1.p | ||||||||
Common Name | GLYMA_13G292500, LOC100814907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 345aa MW: 37375.8 Da PI: 6.7654 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.7 | 7e-37 | 22 | 133 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec.eaesssssasn 84 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + +a++ +++++n Glyma.13G292500.1.p 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwhpnP------NtTAADAENNNNN 105 79**************************************************************6543221......2112222222221 PP TCP 85 sssg.......kaaksaa.kskksqksaa 105 + +g ++++s+ + + +++ + Glyma.13G292500.1.p 106 N-AGssdmaiaEQSESSGyNFQLQRQLGE 133 1.112345565333333323333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-33 | 22 | 129 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.986 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKNAID KLAELPPWHP NPNTTAADAE NNNNNNAGSS DMAIAEQSES 120 SGYNFQLQRQ LGEDHDNHHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPDIISRTNN 180 STEDLGLSLH SFQDPGLIHH GQSQAGANQT PSNDQTLFSG STQVGFEANY PRIVTWNSDA 240 STDMNRTGFM VNSPSALLGQ GGSAAYSQRG TLQSSFSPSL RPWSDIPMAS SEHHHKSQQA 300 SIFGSRFLSD ALPGFCIPAR IQGEDEGHGV GNDRPSSASP NSHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22878 | 0.0 | cotyledon| leaf| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G292500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543311.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_006594827.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_014621438.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_028191367.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 4e-75 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A445IBL9 | 0.0 | A0A445IBL9_GLYSO; Transcription factor TCP4 isoform A | ||||
TrEMBL | K7M2K4 | 0.0 | K7M2K4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G36840.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 9e-74 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G292500.1.p |
Entrez Gene | 100814907 |